myRT

myRT report for GCA_002875885.1_ASM287588v1

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Seq: MCZN01000106.1 Vibrio sp. 10N.261.46.E8 10N.261.46.E8_contig_20, whole genome shotgun sequence (76547 bp)
Overview 1 RT 1: 12084-15838 bp Neighborhood of RT #1 [12084, 15838] RVT-GII GIIM SUFU Feature: gene Location: 12084-12599 bp Feature: gene Location: 12790-12939 bp Feature: gene Location: 13225-14571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13507-14125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3507-1 41 25 bp Feature: domain Description: GIIM Note: maturase Location: 14170-14380 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 70-1 4380 bp Feature: gene Location: 14667-15224 bp Feature: domain Description: SUFU Location: 14775-15213 bp Feature: domain Description: SUFU Location: 1 4775-1 521 3 bp Feature: gene Location: 15635-15838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SUFU (pfam05076)

Seq: MCZN01000167.1 Vibrio sp. 10N.261.46.E8 10N.261.46.E8_contig_77, whole genome shotgun sequence (95048 bp)
Overview 1 RT 1: 2568-7334 bp Neighborhood of RT #1 [2568, 7552] PRK05855 RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 2568-2909 bp Feature: domain Description: PRK05855 Location: 2670-2901 bp Feature: domain Description: PRK05855 Location: 2 670-2 901 bp Feature: gene Location: 3081-3224 bp Feature: gene Location: 4130-5146 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4304-4895 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4304-4895 bp Feature: gene Location: 5136-6761 bp Feature: domain Description: COG3950 Location: 5340-6720 bp Feature: domain Description: COG3950 Location: 5340-672 0 bp Feature: gene Location: 6767-7552 bp Feature: domain Description: TIGR02646 Location: 6884-7334 bp Feature: domain Description: TIGR02 646 Location: 6884-7334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05855 (SDR family oxidoreductase), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)