myRT

myRT report for GCA_002875905.1_ASM287590v1

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Seq: MCZL01000036.1 Vibrio sp. 10N.261.46.F12 10N.261.46.F12_contig_13, whole genome shotgun sequence (107761 bp)
Overview 1 RT 1: 43298-47052 bp Neighborhood of RT #1 [43298, 47052] RVT-GII GIIM SUFU Feature: gene Location: 43298-43813 bp Feature: gene Location: 44004-44153 bp Feature: gene Location: 44439-45785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44721-45339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44721 -45339 bp Feature: domain Description: GIIM Note: maturase Location: 45384-45594 bp Feature: domain Description: GIIM Note: maturase Location: 45384-45594 bp Feature: gene Location: 45881-46438 bp Feature: domain Description: SUFU Location: 45989-46427 bp Feature: domain Description: SUFU Location: 45989-46427 bp Feature: gene Location: 46849-47052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SUFU (pfam05076)

Seq: MCZL01000142.1 Vibrio sp. 10N.261.46.F12 10N.261.46.F12_contig_60, whole genome shotgun sequence (101455 bp)
Overview 1 RT 1: 87497-92385 bp Neighborhood of RT #1 [87497, 92393] TIGR02646 COG3950 RVT-Retrons PRK05855 Feature: gene Location: 87497-88282 bp Feature: domain Description: TIGR02646 Location: 87614-88064 bp Feature: domain Description: TIGR02 646 Location: 87614-88064 bp Feature: gene Location: 88288-89913 bp Feature: domain Description: COG3950 Location: 88492-89872 bp Feature: domain Description: COG3950 Location: 88492 -89872 bp Feature: gene Location: 89903-90919 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90077-90668 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90077-90668 bp Feature: gene Location: 91737-91880 bp Feature: gene Location: 92052-92393 bp Feature: domain Description: PRK05855 Location: 92154-92385 bp Feature: domain Description: PRK05855 Location: 92 154-92 385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, PRK05855 (SDR family oxidoreductase)

Seq: MCZL01000165.1 Vibrio sp. 10N.261.46.F12 10N.261.46.F12_contig_81, whole genome shotgun sequence (46246 bp)
Overview 1 RT 1: 11422-15554 bp Neighborhood of RT #1 [11422, 15554] INT_Lambda_C RVT-UG17 SLATT_5 Feature: gene Location: 11422-12621 bp Feature: domain Description: INT_Lambda_C Location: 12211-12574 bp Feature: domain Description: INT_Lambda_C Location: 12211-12574 bp Feature: gene Location: 12825-13082 bp Feature: gene Location: 13216-14559 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 13447-14053 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 13 447-14053 bp Feature: gene Location: 14559-15182 bp Feature: domain Description: SLATT_5 Location: 14565-15009 bp Feature: domain Description: SLATT_5 Location: 14565-15009 bp Feature: gene Location: 15426-15554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Lambda_C (cd00800), RVT-UG17, SLATT_5 (pfam18160)