myRT

myRT report for GCA_002876065.1_ASM287606v1

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Seq: MCZD01000011.1 Vibrio lentus strain 10N.261.48.C11 10N.261.48.C11_contig_107, whole genome shotgun sequence (18775 bp)
Overview 1 RT 1: 8769-14226 bp Neighborhood of RT #1 [8769, 14237] Big_1 Big_1 DUF1566 RVT-DGRs Avd_like trans_reg_C Feature: gene Location: 8769-11360 bp Feature: domain Description: Big_1 Location: 10350-10479 bp Feature: domain Description: Big_1 Location: 1 0350-1 0479 bp Feature: domain Description: Big_1 Location: 10587-10770 bp Feature: domain Description: Big_1 Location: 1 0587-1 0770 bp Feature: domain Description: DUF1566 Location: 11097-11349 bp Feature: domain Description: DUF1 566 Location: 1 1 097-1 1 349 bp Feature: gene Location: 11449-11940 bp Feature: gene Location: 12302-13558 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12509-13211 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 2509-1 321 1 bp Feature: gene Location: 13538-13912 bp Feature: domain Description: Avd_like Location: 13568-13898 bp Feature: domain Description: Avd_like Location: 1 3568-1 3898 bp Feature: gene Location: 13944-14237 bp Feature: domain Description: trans_reg_C Location: 14007-14226 bp Feature: domain Description: trans_reg_C Location: 1 4007-1 4226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Big_1 (pfam02369), DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376), trans_reg_C (cd00383)

Seq: MCZD01000015.1 Vibrio lentus strain 10N.261.48.C11 10N.261.48.C11_contig_110, whole genome shotgun sequence (27715 bp)
Overview 1 RT 1: 5621-15987 bp Neighborhood of RT #1 [5621, 15987] PRK05943 dnaG RVT-UG2 Feature: gene Location: 5621-5899 bp Feature: domain Description: PRK05943 Location: 5624-5897 bp Feature: domain Description: PRK05943 Location: 562 4-5897 bp Feature: gene Location: 6329-7195 bp Feature: gene Location: 7188-14618 bp Feature: domain Description: dnaG Location: 7200-8358 bp Feature: domain Description: dnaG Location: 72 00-8358 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 9063-9684 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 9063-9684 bp Feature: gene Location: 14979-15704 bp Feature: gene Location: 15778-15987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05943 (50S ribosomal protein L25; Reviewed), dnaG (TIGR01391), RVT-UG2

Seq: MCZD01000031.1 Vibrio lentus strain 10N.261.48.C11 10N.261.48.C11_contig_125, whole genome shotgun sequence (6710 bp)
Overview 1 RT 1: 3-1919 bp Neighborhood of RT #1 [3, 1919] RVT-Retrons HTH_XRE Feature: gene Location: 3-773 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 189-768 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 189-768 bp Feature: gene Location: 1063-1275 bp Feature: domain Description: HTH_XRE Location: 1090-1261 bp Feature: domain Description: HTH_XRE Location: 1090-1261 bp Feature: gene Location: 1377-1919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)

Seq: MCZD01000062.1 Vibrio lentus strain 10N.261.48.C11 10N.261.48.C11_contig_153, whole genome shotgun sequence (3933 bp)
Overview 1 RT 1: 122-3928 bp Neighborhood of RT #1 [122, 3930] RVT_N RVT-GII GIIM TraD_Ftype Feature: gene Location: 122-265 bp Feature: gene Location: 500-1972 bp Feature: domain Description: RVT_N Location: 548-791 bp Feature: domain Description: RVT_N Location: 54 8-791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 836-1463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 836-14 63 bp Feature: domain Description: GIIM Note: maturase Location: 1523-1748 bp Feature: domain Description: GIIM Note: maturase Location: 1523-174 8 bp Feature: gene Location: 2281-3930 bp Feature: domain Description: TraD_Ftype Location: 2293-3928 bp Feature: domain Description: TraD_Ftype Location: 2293-3928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraD_Ftype (TIGR02759)