myRT

myRT report for GCA_002876085.1_ASM287608v1

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Seq: MCZC01000010.1 Vibrio lentus strain 10N.261.48.C12 10N.261.48.C12_contig_17, whole genome shotgun sequence (607784 bp)
Overview 1 RT 1: 442832-448874 bp Neighborhood of RT #1 [442832, 448891] MFS_MefA_like RVT_N RVT-GII GIIM Cas6_I-F Csy3_I-F Feature: gene Location: 442832-444013 bp Feature: domain Description: MFS_MefA_like Location: 442847-443969 bp Feature: domain Description: MFS_MefA_like Location: 442847-443969 bp Feature: gene Location: 444541-444672 bp Feature: gene Location: 445285-446757 bp Feature: RT Description: RVT_N Location: 445333-445576 bp Feature: RT Description: RVT_N Location: 445333-445576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445621-446248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445621 -446248 bp Feature: domain Description: GIIM Note: maturase Location: 446308-446533 bp Feature: domain Description: GIIM Note: maturase Location: 446308-446533 bp Feature: gene Location: 447245-447850 bp Feature: domain Description: Cas6_I-F Location: 447257-447842 bp Feature: domain Description: Cas6_I-F Location: 447257-447842 bp Feature: gene Location: 447860-448891 bp Feature: domain Description: Csy3_I-F Location: 447869-448874 bp Feature: domain Description: Csy3_I-F Location: 447869-448874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MefA_like (cd06173), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Cas6_I-F (cl09835), Csy3_I-F (cl09832)

Seq: MCZC01000021.1 Vibrio lentus strain 10N.261.48.C12 10N.261.48.C12_contig_27, whole genome shotgun sequence (55155 bp)
Overview 1 RT 1: 26531-31991 bp Neighborhood of RT #1 [26531, 32002] Big_1 Big_1 DUF1566 RVT-DGRs Avd_like trans_reg_C Feature: gene Location: 26531-29125 bp Feature: domain Description: Big_1 Location: 28112-28241 bp Feature: domain Description: Big_1 Location: 2 8112 -2 82 41 bp Feature: domain Description: Big_1 Location: 28349-28532 bp Feature: domain Description: Big_1 Location: 2 8349-2 8532 bp Feature: domain Description: DUF1566 Location: 28859-29114 bp Feature: domain Description: DUF1566 Location: 2 8859-2 9114 bp Feature: gene Location: 29214-29705 bp Feature: gene Location: 30067-31323 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30274-30976 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 302 74-30976 bp Feature: gene Location: 31303-31677 bp Feature: domain Description: Avd_like Location: 31333-31663 bp Feature: domain Description: Avd_like Location: 31333-31663 bp Feature: gene Location: 31709-32002 bp Feature: domain Description: trans_reg_C Location: 31772-31991 bp Feature: domain Description: trans_reg_C Location: 31772 -31991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Big_1 (pfam02369), DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376), trans_reg_C (cd00383)

Seq: MCZC01000024.1 Vibrio lentus strain 10N.261.48.C12 10N.261.48.C12_contig_3, whole genome shotgun sequence (1045400 bp)
Overview 1 RT 1: 779499-785160 bp Neighborhood of RT #1 [779499, 785270] PRK05096 RVT-Retrons GstA TPR YdcF-like Feature: gene Location: 779499-780542 bp Feature: domain Description: PRK05096 Location: 779502-780537 bp Feature: domain Description: PRK05096 Location: 779502-78053 7 bp Feature: gene Location: 780989-781939 bp Feature: gene Location: 781926-782843 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 782028-782613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 782028-782613 bp Feature: gene Location: 783014-783688 bp Feature: domain Description: GstA Location: 783017-783605 bp Feature: domain Description: GstA Location: 783 017-783 605 bp Feature: gene Location: 784173-785270 bp Feature: domain Description: TPR Location: 784419-784632 bp Feature: domain Description: TPR Location: 784419-78463 2 bp Feature: domain Description: YdcF-like Location: 784755-785160 bp Feature: domain Description: YdcF-like Location: 784755-785160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05096 (guanosine 5'-monophosphate oxidoreductase; Provisional), RVT-Retrons, GstA (COG0625), TPR (smart00028), YdcF-like (cl00630)

Seq: MCZC01000042.1 Vibrio lentus strain 10N.261.48.C12 10N.261.48.C12_contig_46, whole genome shotgun sequence (300 bp)
Overview 1 RT 1: 2-293 bp Neighborhood of RT #1 [2, 298] RVT-GII Feature: gene Location: 2-298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122-293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122-293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MCZC01000044.1 Vibrio lentus strain 10N.261.48.C12 10N.261.48.C12_contig_48, whole genome shotgun sequence (385 bp)
Overview 1 RT 1: 2-362 bp Neighborhood of RT #1 [2, 382] RVT-GII Feature: gene Location: 2-382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 -362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII