myRT

myRT report for GCA_002876285.1_ASM287628v1

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Seq: MCYG01000024.1 Vibrio lentus strain 10N.261.51.F8 10N.261.51.F8_contig_3, whole genome shotgun sequence (222331 bp)
Overview 1 RT 1: 206181-211873 bp Neighborhood of RT #1 [206181, 211873] REC RVT-Retrons HTH_XRE Feature: gene Location: 206181-207932 bp Feature: domain Description: REC Location: 207087-207312 bp Feature: domain Description: REC Location: 207087-20731 2 bp Feature: gene Location: 207932-208300 bp Feature: gene Location: 208304-210727 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 208490-209141 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 208490-2091 41 bp Feature: gene Location: 211017-211229 bp Feature: domain Description: HTH_XRE Location: 211044-211215 bp Feature: domain Description: HTH_XRE Location: 21 1 044-21 1 21 5 bp Feature: gene Location: 211331-211873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), RVT-Retrons, HTH_XRE (smart00530)

Seq: MCYG01000027.1 Vibrio lentus strain 10N.261.51.F8 10N.261.51.F8_contig_32, whole genome shotgun sequence (15114 bp)
Overview 1 RT 1: 4826-14992 bp Neighborhood of RT #1 [4826, 14992] TraI_TIGR TraD_Ftype RVT_N RVT-GII GIIM Feature: gene Location: 4826-10609 bp Feature: domain Description: TraI_TIGR Location: 4829-10607 bp Feature: domain Description: TraI_TIGR Location: 482 9-10607 bp Feature: gene Location: 10794-12833 bp Feature: domain Description: TraD_Ftype Location: 10806-12522 bp Feature: domain Description: TraD_Ftype Location: 10806-12 52 2 bp Feature: gene Location: 13142-14773 bp Feature: domain Description: RVT_N Location: 13349-13592 bp Feature: domain Description: RVT_N Location: 13349-13592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13637-14264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13637-142 64 bp Feature: domain Description: GIIM Note: maturase Location: 14324-14549 bp Feature: domain Description: GIIM Note: maturase Location: 1432 4-14549 bp Feature: gene Location: 14849-14992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraI_TIGR (TIGR02760), TraD_Ftype (TIGR02759), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MCYG01000058.1 Vibrio lentus strain 10N.261.51.F8 10N.261.51.F8_contig_60, whole genome shotgun sequence (27556 bp)
Overview 1 RT 1: 11705-21598 bp Neighborhood of RT #1 [11705, 21598] dnaG RVT-UG2 Feature: gene Location: 11705-11851 bp Feature: gene Location: 12013-12738 bp Feature: gene Location: 13099-20529 bp Feature: domain Description: dnaG Location: 13111-14269 bp Feature: domain Description: dnaG Location: 13 111-14269 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 14974-15595 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 14974-15595 bp Feature: gene Location: 20522-21388 bp Feature: gene Location: 21401-21598 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG2

Seq: MCYG01000074.1 Vibrio lentus strain 10N.261.51.F8 10N.261.51.F8_contig_75, whole genome shotgun sequence (17261 bp)
Overview 1 RT 1: 1307-6764 bp Neighborhood of RT #1 [1307, 6775] Big_1 Big_1 DUF1566 RVT-DGRs Avd_like trans_reg_C Feature: gene Location: 1307-3898 bp Feature: domain Description: Big_1 Location: 2888-3017 bp Feature: domain Description: Big_1 Location: 2888-3017 bp Feature: domain Description: Big_1 Location: 3125-3308 bp Feature: domain Description: Big_1 Location: 3125-3308 bp Feature: domain Description: DUF1566 Location: 3635-3887 bp Feature: domain Description: DUF1566 Location: 3635-3887 bp Feature: gene Location: 3987-4478 bp Feature: gene Location: 4840-6096 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5047-5749 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 504 7-574 9 bp Feature: gene Location: 6076-6450 bp Feature: domain Description: Avd_like Location: 6106-6436 bp Feature: domain Description: Avd_like Location: 6106-64 36 bp Feature: gene Location: 6482-6775 bp Feature: domain Description: trans_reg_C Location: 6545-6764 bp Feature: domain Description: trans_reg_C Location: 654 5-6764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Big_1 (pfam02369), DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376), trans_reg_C (cd00383)