myRT

myRT report for GCA_002876375.1_ASM287637v1

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Seq: MCXZ01000027.1 Vibrio breoganii strain 10N.261.52.C1 10N.261.52.C1_contig_23, whole genome shotgun sequence (13312 bp)
Overview 1 RT 1: 7554-10140 bp Neighborhood of RT #1 [7554, 10140] HTH_Tnp_1 Tra5 RVT-GII GIIM Feature: gene Location: 7554-7820 bp Feature: domain Description: HTH_Tnp_1 Location: 7560-7767 bp Feature: domain Description: HTH_Tnp_1 Location: 7560-7767 bp Feature: gene Location: 7814-8632 bp Feature: domain Description: Tra5 Location: 8060-8615 bp Feature: domain Description: Tra5 Location: 8060-861 5 bp Feature: gene Location: 8681-9775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8684-9266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8684-9266 bp Feature: domain Description: GIIM Note: maturase Location: 9326-9551 bp Feature: domain Description: GIIM Note: maturase Location: 9326-9551 bp Feature: gene Location: 9794-9934 bp Feature: gene Location: 9991-10140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: MCXZ01000029.1 Vibrio breoganii strain 10N.261.52.C1 10N.261.52.C1_contig_25, whole genome shotgun sequence (36283 bp)
Overview 1 RT 1: 17191-28009 bp Neighborhood of RT #1 [17191, 28029] PRK10938 CBM41_pullulanase pullul_strch E_set_pullulanase_like E_set_pullulanase_like RVT_N RVT-GII GIIM HNH groEL Feature: gene Location: 17191-18627 bp Feature: domain Description: PRK10938 Location: 17230-18613 bp Feature: domain Description: PRK10938 Location: 172 30-18613 bp Feature: gene Location: 18757-22635 bp Feature: domain Description: CBM41_pullulanase Location: 18883-19243 bp Feature: domain Description: CBM41_pullulanase Location: 18883-192 43 bp Feature: domain Description: pullul_strch Location: 19270-21973 bp Feature: domain Description: pullul_strch Location: 192 70-2 1973 bp Feature: domain Description: E_set_pullulanase_like Location: 22018-22189 bp Feature: domain Description: E_set_pullulanase_like Location: 2 2 018-2 2 189 bp Feature: domain Description: E_set_pullulanase_like Location: 22306-22516 bp Feature: domain Description: E_set_pullulanase_like Location: 2 2 306-2 2 516 bp Feature: gene Location: 23543-25318 bp Feature: RT Description: RVT_N Location: 23711-23954 bp Feature: RT Description: RVT_N Location: 2 3711-2 3954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23999-24644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3999-2 4644 bp Feature: domain Description: GIIM Note: maturase Location: 24695-24929 bp Feature: domain Description: GIIM Note: maturase Location: 2 4695-2 492 9 bp Feature: domain Description: HNH Note: nucleases Location: 25175-25310 bp Feature: domain Description: HNH Note: nucleases Location: 2 5175-2 5310 bp Feature: gene Location: 25642-25839 bp Feature: gene Location: 26383-28029 bp Feature: domain Description: groEL Location: 26389-28009 bp Feature: domain Description: groEL Location: 2 6389-2 8009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10938 (putative molybdenum transport ATP-binding protein ModF; Provisional), CBM41_pullulanase (cl04227), pullul_strch (TIGR02103), E_set_pullulanase_like (cd02861), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), groEL (PRK12852)

Seq: MCXZ01000100.1 Vibrio breoganii strain 10N.261.52.C1 10N.261.52.C1_contig_9, whole genome shotgun sequence (28604 bp)
Overview 1 RT 1: 2666-8276 bp Neighborhood of RT #1 [2666, 8276] RVT-GII GIIM YhhI YhhI YhhI Feature: gene Location: 2666-4114 bp Feature: gene Location: 4222-4350 bp Feature: gene Location: 5401-6126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5410-5737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5410-573 7 bp Feature: domain Description: GIIM Note: maturase Location: 5818-6037 bp Feature: domain Description: GIIM Note: maturase Location: 5818-603 7 bp Feature: gene Location: 6351-7466 bp Feature: domain Description: YhhI Location: 6396-6639 bp Feature: domain Description: YhhI Location: 63 96-663 9 bp Feature: domain Description: YhhI Location: 6774-6987 bp Feature: domain Description: YhhI Location: 6774-6987 bp Feature: domain Description: YhhI Location: 7161-7386 bp Feature: domain Description: YhhI Location: 7161-73 86 bp Feature: gene Location: 8133-8276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YhhI (COG5433)