myRT

myRT report for GCA_002876405.1_ASM287640v1

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Seq: MCXX01000009.1 Vibrio lentus strain 10N.261.52.C5 10N.261.52.C5_contig_16, whole genome shotgun sequence (132558 bp)
Overview 1 RT 1: 23154-28611 bp Neighborhood of RT #1 [23154, 28622] trans_reg_C Avd_like RVT-DGRs Big_1 Big_1 DUF1566 Feature: gene Location: 23154-23447 bp Feature: domain Description: trans_reg_C Location: 23217-23436 bp Feature: domain Description: trans_reg_C Location: 2321 7-23436 bp Feature: gene Location: 23479-23853 bp Feature: domain Description: Avd_like Location: 23509-23839 bp Feature: domain Description: Avd_like Location: 23509-23839 bp Feature: gene Location: 23833-25089 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24040-24742 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24040-24742 bp Feature: gene Location: 25451-25942 bp Feature: gene Location: 26031-28622 bp Feature: domain Description: Big_1 Location: 27612-27741 bp Feature: domain Description: Big_1 Location: 2761 2-27741 bp Feature: domain Description: Big_1 Location: 27849-28032 bp Feature: domain Description: Big_1 Location: 27849-28032 bp Feature: domain Description: DUF1566 Location: 28359-28611 bp Feature: domain Description: DUF1 566 Location: 28359-2861 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), Avd_like (cd16376), RVT-DGRs, Big_1 (pfam02369), DUF1566 (pfam07603)

Seq: MCXX01000013.1 Vibrio lentus strain 10N.261.52.C5 10N.261.52.C5_contig_2, whole genome shotgun sequence (1138631 bp)
Overview 1 RT 1: 900035-906077 bp Neighborhood of RT #1 [900035, 906094] MFS_MefA_like RVT_N RVT-GII GIIM Cas6_I-F Csy3_I-F Feature: gene Location: 900035-901216 bp Feature: domain Description: MFS_MefA_like Location: 900050-901172 bp Feature: domain Description: MFS_MefA_like Location: 900050-901172 bp Feature: gene Location: 901744-901875 bp Feature: gene Location: 902488-903960 bp Feature: RT Description: RVT_N Location: 902536-902779 bp Feature: RT Description: RVT_N Location: 902 536-902 779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 902824-903451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 902 82 4-903451 bp Feature: domain Description: GIIM Note: maturase Location: 903511-903736 bp Feature: domain Description: GIIM Note: maturase Location: 903511-903736 bp Feature: gene Location: 904448-905053 bp Feature: domain Description: Cas6_I-F Location: 904460-905045 bp Feature: domain Description: Cas6_I-F Location: 904460-905045 bp Feature: gene Location: 905063-906094 bp Feature: domain Description: Csy3_I-F Location: 905072-906077 bp Feature: domain Description: Csy3_I-F Location: 905072 -906077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MefA_like (cd06173), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Cas6_I-F (cl09835), Csy3_I-F (cl09832)

Seq: MCXX01000045.1 Vibrio lentus strain 10N.261.52.C5 10N.261.52.C5_contig_6, whole genome shotgun sequence (870395 bp)
Overview 1 RT 1: 239437-245221 bp Neighborhood of RT #1 [239437, 245226] TPR YdcF-like GstA RVT-Retrons PRK05096 Feature: gene Location: 239437-240534 bp Feature: domain Description: TPR Location: 239683-239896 bp Feature: domain Description: TPR Location: 23 9683 -23 9896 bp Feature: domain Description: YdcF-like Location: 240019-240424 bp Feature: domain Description: YdcF-like Location: 240019-240424 bp Feature: gene Location: 241019-241693 bp Feature: domain Description: GstA Location: 241022-241610 bp Feature: domain Description: GstA Location: 241022-241610 bp Feature: gene Location: 241864-242781 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 241966-242551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 241966-242551 bp Feature: gene Location: 242768-243718 bp Feature: gene Location: 244183-245226 bp Feature: domain Description: PRK05096 Location: 244186-245221 bp Feature: domain Description: PRK05096 Location: 244186-245221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), YdcF-like (cl00630), GstA (COG0625), RVT-Retrons, PRK05096 (guanosine 5'-monophosphate oxidoreductase; Provisional)