myRT

myRT report for GCA_002876465.1_ASM287646v1

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Seq: MDBT01000025.1 Vibrio splendidus strain 10N.222.46.C2 10N.222.46.C2_contig_12, whole genome shotgun sequence (9054 bp)
Overview 1 RT 1: 3-6873 bp Neighborhood of RT #1 [3, 6873] RVT-GII GIIM PRK08250 QdoI HTH_ARAC RVT_N RVT-GII GIIM Feature: gene Location: 3-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99-717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99-71 7 bp Feature: domain Description: GIIM Note: maturase Location: 762-972 bp Feature: domain Description: GIIM Note: maturase Location: 762-972 bp Feature: gene Location: 1261-1737 bp Feature: gene Location: 2389-3105 bp Feature: domain Description: PRK08250 Location: 2392-3082 bp Feature: domain Description: PRK08250 Location: 2392-3082 bp Feature: gene Location: 3204-3974 bp Feature: domain Description: QdoI Location: 3222-3456 bp Feature: domain Description: QdoI Location: 3222-3456 bp Feature: domain Description: HTH_ARAC Location: 3717-3960 bp Feature: domain Description: HTH_ARAC Location: 371 7-3960 bp Feature: gene Location: 4162-4485 bp Feature: gene Location: 4521-6152 bp Feature: domain Description: RVT_N Location: 4728-4971 bp Feature: domain Description: RVT_N Location: 4728-4971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5016-5643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 6-5643 bp Feature: domain Description: GIIM Note: maturase Location: 5703-5928 bp Feature: domain Description: GIIM Note: maturase Location: 5703-5928 bp Feature: gene Location: 6319-6465 bp Feature: gene Location: 6475-6873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK08250 (glutamine amidotransferase; Provisional), QdoI (COG1917), HTH_ARAC (smart00342), RVT_N (pfam13655)

Seq: MDBT01000095.1 Vibrio splendidus strain 10N.222.46.C2 10N.222.46.C2_contig_38, whole genome shotgun sequence (34313 bp)
Overview 1 RT 1: 2-2512 bp Neighborhood of RT #1 [2, 2517] RVT_N RVT-GII GIIM PRK04980 Feature: gene Location: 2-127 bp Feature: gene Location: 362-1834 bp Feature: domain Description: RVT_N Location: 410-653 bp Feature: domain Description: RVT_N Location: 410-653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 698-1325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 698-132 5 bp Feature: domain Description: GIIM Note: maturase Location: 1385-1610 bp Feature: domain Description: GIIM Note: maturase Location: 1385-1610 bp Feature: gene Location: 1919-2116 bp Feature: gene Location: 2206-2517 bp Feature: domain Description: PRK04980 Location: 2212-2512 bp Feature: domain Description: PRK04980 Location: 2 2 12 -2 512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK04980 (hypothetical protein; Provisional)

Seq: MDBT01000108.1 Vibrio splendidus strain 10N.222.46.C2 10N.222.46.C2_contig_5, whole genome shotgun sequence (84889 bp)
Overview 1 RT 1: 14390-20706 bp Neighborhood of RT #1 [14390, 20708] InsE PHA02517 RVT-UG7 pheT Feature: gene Location: 14390-14701 bp Feature: domain Description: InsE Location: 14393-14693 bp Feature: domain Description: InsE Location: 143 93 -14693 bp Feature: gene Location: 14734-15438 bp Feature: domain Description: PHA02517 Location: 14752-15427 bp Feature: domain Description: PHA02517 Location: 14752-15427 bp Feature: gene Location: 15705-17423 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 16227-16632 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 16227-1663 2 bp Feature: gene Location: 17420-18157 bp Feature: gene Location: 18303-20708 bp Feature: domain Description: pheT Location: 18306-20706 bp Feature: domain Description: pheT Location: 183 06-20706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-UG7, pheT (PRK09616)

Seq: MDBT01000116.1 Vibrio splendidus strain 10N.222.46.C2 10N.222.46.C2_contig_57, whole genome shotgun sequence (32555 bp)
Overview 1 RT 1: 10302-18415 bp Neighborhood of RT #1 [10302, 18415] DUF4365 RVT-Retrons TIR_2 COG4688 Feature: gene Location: 10302-11411 bp Feature: gene Location: 11404-11958 bp Feature: domain Description: DUF4365 Location: 11461-11911 bp Feature: domain Description: DUF4 365 Location: 114 61-11911 bp Feature: gene Location: 12390-13979 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12642-13254 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1264 2-13254 bp Feature: domain Description: TIR_2 Location: 13590-13938 bp Feature: domain Description: TIR_2 Location: 13590-13938 bp Feature: gene Location: 14521-16812 bp Feature: domain Description: COG4688 Location: 16048-16366 bp Feature: domain Description: COG4 688 Location: 1604 8-16366 bp Feature: gene Location: 16805-18415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4365 (pfam14280), RVT-Retrons, TIR_2 (pfam13676), COG4688 (Uncharacterized protein )

Seq: MDBT01000118.1 Vibrio splendidus strain 10N.222.46.C2 10N.222.46.C2_contig_59, whole genome shotgun sequence (83049 bp)
Overview 1 RT 1: 299-3484 bp Neighborhood of RT #1 [299, 3484] RVT-UNC Feature: gene Location: 299-1195 bp Feature: gene Location: 1195-2871 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1597-1966 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 15 97-1966 bp Feature: gene Location: 2883-3017 bp Feature: gene Location: 3098-3484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs/RVT-UG3/RVT-UG5/RVT-UG25(RVT-UNC)

Seq: MDBT01000119.1 Vibrio splendidus strain 10N.222.46.C2 10N.222.46.C2_contig_6, whole genome shotgun sequence (31098 bp)
Overview 1 RT 1: 5784-9276 bp Neighborhood of RT #1 [5784, 9276] DUF3187 RVT-UG17 SLATT_5 Feature: gene Location: 5784-5972 bp Feature: gene Location: 6132-7115 bp Feature: domain Description: DUF3187 Location: 6174-7113 bp Feature: domain Description: DUF3187 Location: 6 174-7113 bp Feature: gene Location: 7221-8495 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 7401-7983 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 7401-7983 bp Feature: gene Location: 8537-9112 bp Feature: domain Description: SLATT_5 Location: 8561-9098 bp Feature: domain Description: SLATT_5 Location: 856 1-9098 bp Feature: gene Location: 9145-9276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3187 (pfam11383), RVT-UG17, SLATT_5 (pfam18160)

Seq: MDBT01000138.1 Vibrio splendidus strain 10N.222.46.C2 10N.222.46.C2_contig_77, whole genome shotgun sequence (24256 bp)
Overview 1 RT 1: 3-8271 bp Neighborhood of RT #1 [3, 8271] RVT_N RVT-GII GIIM Feature: gene Location: 3-224 bp Feature: gene Location: 242-1831 bp Feature: domain Description: RVT_N Location: 407-650 bp Feature: domain Description: RVT_N Location: 407 -650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695-1322 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1607 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1607 bp Feature: gene Location: 2191-7575 bp Feature: gene Location: 7879-8271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MDBT01000149.1 Vibrio splendidus strain 10N.222.46.C2 10N.222.46.C2_contig_87, whole genome shotgun sequence (2207 bp)
Overview 1 RT 1: 338-1861 bp Neighborhood of RT #1 [338, 2085] RVT_N RVT-GII GIIM Feature: gene Location: 338-535 bp Feature: gene Location: 613-2085 bp Feature: domain Description: RVT_N Location: 661-904 bp Feature: domain Description: RVT_N Location: 661-904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 949-1576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 949-1576 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1861 bp Feature: domain Description: GIIM Note: maturase Location: 1633-18 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)