myRT

myRT report for GCA_002876535.1_ASM287653v1

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Seq: MDBJ01000025.1 Vibrio breoganii strain 10N.222.49.F8 10N.222.49.F8_contig_12, whole genome shotgun sequence (8458 bp)
Overview 1 RT 1: 5712-8309 bp Neighborhood of RT #1 [5712, 8309] DDE_Tnp_1_assoc RVT-GII GIIM Feature: gene Location: 5712-6032 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 5736-5976 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 5736-5976 bp Feature: gene Location: 6352-6495 bp Feature: gene Location: 6522-7835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6741-7356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6741 -7356 bp Feature: domain Description: GIIM Note: maturase Location: 7407-7608 bp Feature: domain Description: GIIM Note: maturase Location: 7407-7608 bp Feature: gene Location: 8007-8309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), RVT-GII, GIIM (pfam08388)

Seq: MDBJ01000041.1 Vibrio breoganii strain 10N.222.49.F8 10N.222.49.F8_contig_135, whole genome shotgun sequence (427 bp)
Overview 1 RT 1: 3-423 bp Neighborhood of RT #1 [3, 425] RVT-GII Feature: gene Location: 3-425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234-423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 34-42 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MDBJ01000048.1 Vibrio breoganii strain 10N.222.49.F8 10N.222.49.F8_contig_18, whole genome shotgun sequence (339327 bp)
Overview 1 RT 1: 54187-59599 bp Neighborhood of RT #1 [54187, 59763] Pentapeptide_4 Pentapeptide_4 RVT_N RVT-GII GIIM T5orf172 HEPN_Apea Feature: gene Location: 54187-54777 bp Feature: domain Description: Pentapeptide_4 Location: 54265-54511 bp Feature: domain Description: Pentapeptide_4 Location: 54265-54511 bp Feature: domain Description: Pentapeptide_4 Location: 54538-54733 bp Feature: domain Description: Pentapeptide_4 Location: 5453 8-5473 3 bp Feature: gene Location: 55045-55200 bp Feature: gene Location: 55340-56896 bp Feature: RT Description: RVT_N Location: 55472-55715 bp Feature: RT Description: RVT_N Location: 55472-55715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55760-56387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55760-563 87 bp Feature: domain Description: GIIM Note: maturase Location: 56447-56672 bp Feature: domain Description: GIIM Note: maturase Location: 56447-56672 bp Feature: gene Location: 57203-58180 bp Feature: domain Description: T5orf172 Location: 57209-57476 bp Feature: domain Description: T5orf172 Location: 57209-57476 bp Feature: gene Location: 58369-59763 bp Feature: domain Description: HEPN_Apea Location: 59344-59599 bp Feature: domain Description: HEPN_Apea Location: 593 44-59599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pentapeptide_4 (pfam13599), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), T5orf172 (smart00974), HEPN_Apea (pfam18739)

Seq: MDBJ01000089.1 Vibrio breoganii strain 10N.222.49.F8 10N.222.49.F8_contig_55, whole genome shotgun sequence (2100 bp)
Overview 1 RT 1: 66-1790 bp Neighborhood of RT #1 [66, 1790] RVT-GII GIIM Feature: gene Location: 66-1400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279-900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279-900 bp Feature: domain Description: GIIM Note: maturase Location: 948-1170 bp Feature: domain Description: GIIM Note: maturase Location: 94 8-1170 bp Feature: gene Location: 1563-1790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MDBJ01000105.1 Vibrio breoganii strain 10N.222.49.F8 10N.222.49.F8_contig_7, whole genome shotgun sequence (140924 bp)
Overview 1 RT 1: 1-4828 bp Neighborhood of RT #1 [1, 4828] DDE_Tnp_1_assoc YhhI YhhI RVT-GII GIIM Feature: gene Location: 1-741 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 7-97 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 7-97 bp Feature: domain Description: YhhI Location: 238-451 bp Feature: domain Description: YhhI Location: 238-45 1 bp Feature: domain Description: YhhI Location: 619-715 bp Feature: domain Description: YhhI Location: 619-715 bp Feature: gene Location: 851-1009 bp Feature: gene Location: 1281-2528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1482-2139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1482-2139 bp Feature: domain Description: GIIM Note: maturase Location: 2220-2439 bp Feature: domain Description: GIIM Note: maturase Location: 2220-2439 bp Feature: gene Location: 3439-3669 bp Feature: gene Location: 3860-4828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808), YhhI (COG5433)