myRT

myRT report for GCA_002876765.1_ASM287676v1

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Seq: MCZP01000005.1 Vibrio breoganii strain 10N.261.46.B7 10N.261.46.B7_contig_101, whole genome shotgun sequence (43989 bp)
Overview 1 RT 1: 4431-9843 bp Neighborhood of RT #1 [4431, 10007] Pentapeptide_4 Pentapeptide_4 RVT_N RVT-GII GIIM T5orf172 HEPN_Apea Feature: gene Location: 4431-5021 bp Feature: domain Description: Pentapeptide_4 Location: 4509-4755 bp Feature: domain Description: Pentapeptide_4 Location: 4509-4755 bp Feature: domain Description: Pentapeptide_4 Location: 4782-4977 bp Feature: domain Description: Pentapeptide_4 Location: 4782-4977 bp Feature: gene Location: 5289-5444 bp Feature: gene Location: 5584-7140 bp Feature: RT Description: RVT_N Location: 5716-5959 bp Feature: RT Description: RVT_N Location: 571 6-5959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6004-6631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6004-6631 bp Feature: domain Description: GIIM Note: maturase Location: 6691-6916 bp Feature: domain Description: GIIM Note: maturase Location: 6691 -691 6 bp Feature: gene Location: 7447-8424 bp Feature: domain Description: T5orf172 Location: 7453-7720 bp Feature: domain Description: T5orf1 72 Location: 7453-7720 bp Feature: gene Location: 8613-10007 bp Feature: domain Description: HEPN_Apea Location: 9588-9843 bp Feature: domain Description: HEPN_Apea Location: 9588-9843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pentapeptide_4 (pfam13599), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), T5orf172 (smart00974), HEPN_Apea (pfam18739)

Seq: MCZP01000017.1 Vibrio breoganii strain 10N.261.46.B7 10N.261.46.B7_contig_112, whole genome shotgun sequence (37174 bp)
Overview 1 RT 1: 376-6533 bp Neighborhood of RT #1 [376, 6658] Phage_int_SAM_4 Integrase_1 RVT_N RVT-GII GIIM CarboxypepD_reg CarboxypepD_reg Feature: gene Location: 376-1389 bp Feature: domain Description: Phage_int_SAM_4 Location: 496-700 bp Feature: domain Description: Phage_int_SAM_4 Location: 496-700 bp Feature: domain Description: Integrase_1 Location: 817-1189 bp Feature: domain Description: Integrase_1 Location: 817-1189 bp Feature: gene Location: 2535-2732 bp Feature: gene Location: 2751-4340 bp Feature: RT Description: RVT_N Location: 2916-3159 bp Feature: RT Description: RVT_N Location: 2 916-3159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3204-3831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 04-3831 bp Feature: domain Description: GIIM Note: maturase Location: 3891-4116 bp Feature: domain Description: GIIM Note: maturase Location: 3891-4116 bp Feature: gene Location: 4358-4585 bp Feature: gene Location: 5648-6658 bp Feature: domain Description: CarboxypepD_reg Location: 6023-6191 bp Feature: domain Description: CarboxypepD_reg Location: 602 3-6191 bp Feature: domain Description: CarboxypepD_reg Location: 6290-6533 bp Feature: domain Description: CarboxypepD_reg Location: 62 90-6533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Phage_int_SAM_4 (pfam13495), Integrase_1 (pfam12835), CarboxypepD_reg (pfam13620)

Seq: MCZP01000055.1 Vibrio breoganii strain 10N.261.46.B7 10N.261.46.B7_contig_147, whole genome shotgun sequence (4098 bp)
Overview 1 RT 1: 265-3194 bp Neighborhood of RT #1 [265, 3271] RVT-GII GIIM DDE_Tnp_1_assoc Feature: gene Location: 265-525 bp Feature: gene Location: 808-939 bp Feature: gene Location: 1149-2462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1368-1983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 68-1983 bp Feature: domain Description: GIIM Note: maturase Location: 2034-2235 bp Feature: domain Description: GIIM Note: maturase Location: 203 4-223 5 bp Feature: gene Location: 2489-2632 bp Feature: gene Location: 2930-3271 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 2954-3194 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 2954-3 194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MCZP01000139.1 Vibrio breoganii strain 10N.261.46.B7 10N.261.46.B7_contig_82, whole genome shotgun sequence (2090 bp)
Overview 1 RT 1: 19-2089 bp Neighborhood of RT #1 [19, 2089] RVT-GII GIIM Feature: gene Location: 19-1353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232-853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232-853 bp Feature: domain Description: GIIM Note: maturase Location: 901-1123 bp Feature: domain Description: GIIM Note: maturase Location: 901-1123 bp Feature: gene Location: 1516-1743 bp Feature: gene Location: 1943-2089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MCZP01000152.1 Vibrio breoganii strain 10N.261.46.B7 10N.261.46.B7_contig_94, whole genome shotgun sequence (31837 bp)
Overview 1 RT 1: 20033-24741 bp Neighborhood of RT #1 [20033, 24776] TIGR02646 COG3950 RVT-Retrons DUF5062 TauE Feature: gene Location: 20033-20773 bp Feature: domain Description: TIGR02646 Location: 20126-20591 bp Feature: domain Description: TIGR02646 Location: 20126-205 91 bp Feature: gene Location: 20770-22413 bp Feature: domain Description: COG3950 Location: 20977-22339 bp Feature: domain Description: COG395 0 Location: 20977-22339 bp Feature: gene Location: 22406-23326 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22508-23087 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 225 08-23087 bp Feature: gene Location: 23675-23935 bp Feature: domain Description: DUF5062 Location: 23693-23933 bp Feature: domain Description: DUF5 062 Location: 23693-23933 bp Feature: gene Location: 24057-24776 bp Feature: domain Description: TauE Location: 24084-24741 bp Feature: domain Description: TauE Location: 24084-24741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, DUF5062 (pfam16691), TauE (pfam01925)