myRT

myRT report for GCA_002876845.1_ASM287684v1

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Seq: MCZH01000012.1 Vibrio lentus strain 10N.261.48.B11 10N.261.48.B11_contig_19, whole genome shotgun sequence (460593 bp)
Overview 1 RT 1: 239416-245200 bp Neighborhood of RT #1 [239416, 245205] TPR YdcF-like GstA RVT-Retrons PRK05096 Feature: gene Location: 239416-240513 bp Feature: domain Description: TPR Location: 239662-239875 bp Feature: domain Description: TPR Location: 239662-239875 bp Feature: domain Description: YdcF-like Location: 239998-240403 bp Feature: domain Description: YdcF-like Location: 239998-240403 bp Feature: gene Location: 240998-241672 bp Feature: domain Description: GstA Location: 241001-241589 bp Feature: domain Description: GstA Location: 241 001 -241 589 bp Feature: gene Location: 241843-242760 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 241945-242530 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 241 945-242530 bp Feature: gene Location: 242747-243697 bp Feature: gene Location: 244162-245205 bp Feature: domain Description: PRK05096 Location: 244165-245200 bp Feature: domain Description: PRK05096 Location: 2441 65-245200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), YdcF-like (cl00630), GstA (COG0625), RVT-Retrons, PRK05096 (guanosine 5'-monophosphate oxidoreductase; Provisional)

Seq: MCZH01000013.1 Vibrio lentus strain 10N.261.48.B11 10N.261.48.B11_contig_2, whole genome shotgun sequence (156562 bp)
Overview 1 RT 1: 127941-133398 bp Neighborhood of RT #1 [127941, 133409] Big_1 Big_1 DUF1566 RVT-DGRs Avd_like trans_reg_C Feature: gene Location: 127941-130532 bp Feature: domain Description: Big_1 Location: 129522-129651 bp Feature: domain Description: Big_1 Location: 12 952 2 -12 9651 bp Feature: domain Description: Big_1 Location: 129759-129942 bp Feature: domain Description: Big_1 Location: 12 9759-12 9942 bp Feature: domain Description: DUF1566 Location: 130269-130521 bp Feature: domain Description: DUF1566 Location: 1302 69-13052 1 bp Feature: gene Location: 130621-131112 bp Feature: gene Location: 131474-132730 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 131681-132383 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 131681-132 383 bp Feature: gene Location: 132710-133084 bp Feature: domain Description: Avd_like Location: 132740-133070 bp Feature: domain Description: Avd_like Location: 132 740-133070 bp Feature: gene Location: 133116-133409 bp Feature: domain Description: trans_reg_C Location: 133179-133398 bp Feature: domain Description: trans_reg_C Location: 133179-133398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Big_1 (pfam02369), DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376), trans_reg_C (cd00383)

Seq: MCZH01000035.1 Vibrio lentus strain 10N.261.48.B11 10N.261.48.B11_contig_4, whole genome shotgun sequence (1306572 bp)
Overview 1 RT 1: 422851-428866 bp Neighborhood of RT #1 [422851, 428910] Csy3_I-F Cas6_I-F RVT_N RVT-GII GIIM MFS_MefA_like Feature: gene Location: 422851-423882 bp Feature: domain Description: Csy3_I-F Location: 422860-423865 bp Feature: domain Description: Csy3 _I-F Location: 422860-423 865 bp Feature: gene Location: 423892-424497 bp Feature: domain Description: Cas6_I-F Location: 423904-424489 bp Feature: domain Description: Cas6_I-F Location: 423 904-424489 bp Feature: gene Location: 424985-426616 bp Feature: RT Description: RVT_N Location: 425192-425435 bp Feature: RT Description: RVT_N Location: 425192-42543 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425480-426107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425480-426107 bp Feature: domain Description: GIIM Note: maturase Location: 426167-426392 bp Feature: domain Description: GIIM Note: maturase Location: 426167-4263 92 bp Feature: gene Location: 427070-427201 bp Feature: gene Location: 427729-428910 bp Feature: domain Description: MFS_MefA_like Location: 427744-428866 bp Feature: domain Description: MFS_MefA_like Location: 427744-428866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Csy3_I-F (cl09832), Cas6_I-F (cl09835), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), MFS_MefA_like (cd06173)