myRT

myRT report for GCA_002876905.1_ASM287690v1

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Seq: MCYX01000022.1 Vibrio splendidus strain 10N.261.49.A1 10N.261.49.A1_contig_117, whole genome shotgun sequence (6094 bp)
Overview 1 RT 1: 2942-5925 bp Neighborhood of RT #1 [2942, 5925] Acetyltransf_1 RVT-GII GIIM Feature: gene Location: 2942-3079 bp Feature: gene Location: 3634-4125 bp Feature: domain Description: Acetyltransf_1 Location: 3802-4060 bp Feature: domain Description: Acetyltransf_1 Location: 3802-4060 bp Feature: gene Location: 4212-5558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4494-5112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4494-51 1 2 bp Feature: domain Description: GIIM Note: maturase Location: 5160-5364 bp Feature: domain Description: GIIM Note: maturase Location: 51 60-5364 bp Feature: gene Location: 5577-5741 bp Feature: gene Location: 5764-5925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_1 (pfam00583), RVT-GII, GIIM (pfam08388)

Seq: MCYX01000057.1 Vibrio splendidus strain 10N.261.49.A1 10N.261.49.A1_contig_149, whole genome shotgun sequence (1806 bp)
Overview 1 RT 1: 89-1679 bp Neighborhood of RT #1 [89, 1804] RVT-GII GIIM Feature: gene Location: 89-238 bp Feature: gene Location: 524-1804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806-1424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806-142 4 bp Feature: domain Description: GIIM Note: maturase Location: 1469-1679 bp Feature: domain Description: GIIM Note: maturase Location: 1469-1679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MCYX01000113.1 Vibrio splendidus strain 10N.261.49.A1 10N.261.49.A1_contig_2, whole genome shotgun sequence (123047 bp)
Overview 1 RT 1: 22430-27748 bp Neighborhood of RT #1 [22430, 27924] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 22430-23356 bp Feature: gene Location: 23979-24179 bp Feature: gene Location: 24685-25644 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24793-25396 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24793 -253 96 bp Feature: gene Location: 25634-27271 bp Feature: domain Description: COG3950 Location: 25817-27077 bp Feature: domain Description: COG3 950 Location: 25817-27077 bp Feature: gene Location: 27277-27924 bp Feature: domain Description: TIGR02646 Location: 27346-27748 bp Feature: domain Description: TIGR02646 Location: 273 46-27748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: MCYX01000147.1 Vibrio splendidus strain 10N.261.49.A1 10N.261.49.A1_contig_23, whole genome shotgun sequence (16842 bp)
Overview 1 RT 1: 184-5279 bp Neighborhood of RT #1 [184, 5293] RVT_N RVT-GII GIIM RVT_N RVT-GII GIIM TnsE_C Feature: gene Location: 184-1698 bp Feature: RT Description: RVT_N Location: 274-517 bp Feature: RT Description: RVT_N Location: 274 -517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 562-1189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 562-1189 bp Feature: domain Description: GIIM Note: maturase Location: 1246-1474 bp Feature: domain Description: GIIM Note: maturase Location: 124 6-14 74 bp Feature: gene Location: 1918-2103 bp Feature: gene Location: 2122-3753 bp Feature: RT Description: RVT_N Location: 2329-2572 bp Feature: RT Description: RVT_N Location: 2329-2572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2617-3244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2617-324 4 bp Feature: domain Description: GIIM Note: maturase Location: 3301-3529 bp Feature: domain Description: GIIM Note: maturase Location: 3301-3529 bp Feature: gene Location: 4106-4318 bp Feature: gene Location: 4616-5293 bp Feature: domain Description: TnsE_C Location: 4841-5279 bp Feature: domain Description: TnsE_C Location: 4 84 1-5279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TnsE_C (pfam18623)

Seq: MCYX01000242.1 Vibrio splendidus strain 10N.261.49.A1 10N.261.49.A1_contig_90, whole genome shotgun sequence (9628 bp)
Overview 1 RT 1: 4959-9627 bp Neighborhood of RT #1 [4959, 9627] bacHORMA_1 NT_2-5OAS_ClassI-CCAase PRK13300 RVT_N RVT-GII GIIM Feature: gene Location: 4959-5468 bp Feature: domain Description: bacHORMA_1 Location: 4971-5457 bp Feature: domain Description: bacHORMA_1 Location: 4971-5 45 7 bp Feature: gene Location: 5471-6457 bp Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 5570-6038 bp Feature: domain Description: NT_2-5 OAS_ClassI-CCAase Location: 5 5 70-6038 bp Feature: domain Description: PRK13300 Location: 6197-6347 bp Feature: domain Description: PRK13300 Location: 6197-6347 bp Feature: gene Location: 7031-8662 bp Feature: RT Description: RVT_N Location: 7238-7481 bp Feature: RT Description: RVT_N Location: 7238-7481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7526-8153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75 26-815 3 bp Feature: domain Description: GIIM Note: maturase Location: 8213-8438 bp Feature: domain Description: GIIM Note: maturase Location: 8213-8438 bp Feature: gene Location: 9058-9627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bacHORMA_1 (pfam18138), NT_2-5OAS_ClassI-CCAase (cd05400), PRK13300 (CCA tRNA nucleotidyltransferase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MCYX01000243.1 Vibrio splendidus strain 10N.261.49.A1 10N.261.49.A1_contig_91, whole genome shotgun sequence (7331 bp)
Overview 1 RT 1: 1934-5300 bp Neighborhood of RT #1 [1934, 5300] DUF695 RVT_N RVT-GII GIIM Feature: gene Location: 1934-2101 bp Feature: gene Location: 2253-2744 bp Feature: domain Description: DUF695 Location: 2331-2709 bp Feature: domain Description: DUF6 95 Location: 2331-2709 bp Feature: gene Location: 3454-4956 bp Feature: RT Description: RVT_N Location: 3532-3775 bp Feature: RT Description: RVT_N Location: 3532-3775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3820-4447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3820-4447 bp Feature: domain Description: GIIM Note: maturase Location: 4507-4732 bp Feature: domain Description: GIIM Note: maturase Location: 4507-4732 bp Feature: gene Location: 4975-5106 bp Feature: gene Location: 5139-5300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF695 (pfam05117), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)