myRT

myRT report for GCA_002877005.1_ASM287700v1

Download annotations/find similar RTs

Seq: MCYP01000004.1 Vibrio lentus strain 10N.261.49.F8 10N.261.49.F8_contig_11, whole genome shotgun sequence (55379 bp)
Overview 1 RT 1: 23153-28613 bp Neighborhood of RT #1 [23153, 28624] trans_reg_C Avd_like RVT-DGRs Big_1 Big_1 DUF1566 Feature: gene Location: 23153-23446 bp Feature: domain Description: trans_reg_C Location: 23216-23435 bp Feature: domain Description: trans_reg_C Location: 2321 6-23435 bp Feature: gene Location: 23478-23852 bp Feature: domain Description: Avd_like Location: 23508-23838 bp Feature: domain Description: Avd_like Location: 23508-23838 bp Feature: gene Location: 23832-25088 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24039-24741 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24039-24741 bp Feature: gene Location: 25450-25941 bp Feature: gene Location: 26030-28624 bp Feature: domain Description: Big_1 Location: 27611-27740 bp Feature: domain Description: Big_1 Location: 2761 1 -27740 bp Feature: domain Description: Big_1 Location: 27848-28031 bp Feature: domain Description: Big_1 Location: 27848-28031 bp Feature: domain Description: DUF1566 Location: 28358-28613 bp Feature: domain Description: DUF1 566 Location: 28358-2861 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), Avd_like (cd16376), RVT-DGRs, Big_1 (pfam02369), DUF1566 (pfam07603)

Seq: MCYP01000006.1 Vibrio lentus strain 10N.261.49.F8 10N.261.49.F8_contig_13, whole genome shotgun sequence (277052 bp)
Overview 1 RT 1: 36352-46996 bp Neighborhood of RT #1 [36352, 47001] AE_Prim_S_like RVT-UG10 pheT pheS Feature: gene Location: 36352-37278 bp Feature: gene Location: 37559-37921 bp Feature: gene Location: 38042-43369 bp Feature: domain Description: AE_Prim_S_like Location: 38117-38432 bp Feature: domain Description: AE_Prim_S_like Location: 38117-38432 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 39374-40034 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 39374-40034 bp Feature: gene Location: 43519-45906 bp Feature: domain Description: pheT Location: 43522-45904 bp Feature: domain Description: pheT Location: 4352 2 -45904 bp Feature: gene Location: 45925-47001 bp Feature: domain Description: pheS Location: 46018-46996 bp Feature: domain Description: pheS Location: 46018-46996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AE_Prim_S_like (cl01287), RVT-UG10, pheT (PRK09616), pheS (TIGR00468)

Seq: MCYP01000014.1 Vibrio lentus strain 10N.261.49.F8 10N.261.49.F8_contig_20, whole genome shotgun sequence (137110 bp)
Overview 1 RT 1: 124514-128204 bp Neighborhood of RT #1 [124514, 128212] Metallophos_2 RVT-GII GIIM DHPS-like_MBL-fold Feature: gene Location: 124514-125275 bp Feature: domain Description: Metallophos_2 Location: 124535-125087 bp Feature: domain Description: Metallophos_2 Location: 12453 5-125087 bp Feature: gene Location: 125280-125462 bp Feature: gene Location: 125919-126878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126201-126819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126201-126819 bp Feature: gene Location: 126911-127264 bp Feature: domain Description: GIIM Note: maturase Location: 126932-127070 bp Feature: domain Description: GIIM Note: maturase Location: 12693 2-127070 bp Feature: gene Location: 127367-128212 bp Feature: domain Description: DHPS-like_MBL-fold Location: 127376-128204 bp Feature: domain Description: DHPS-like_MBL-fold Location: 1273 76-128204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Metallophos_2 (pfam12850), RVT-GII, GIIM (pfam08388), DHPS-like_MBL-fold (cd07713)

Seq: MCYP01000041.1 Vibrio lentus strain 10N.261.49.F8 10N.261.49.F8_contig_45, whole genome shotgun sequence (9574 bp)
Overview 1 RT 1: 4185-7790 bp Neighborhood of RT #1 [4185, 7790] DUF2971 RVT_N RVT-GII GIIM Feature: gene Location: 4185-5075 bp Feature: domain Description: DUF2971 Location: 4485-4707 bp Feature: domain Description: DUF2971 Location: 4 4 85-4 707 bp Feature: gene Location: 5415-5558 bp Feature: gene Location: 5793-7265 bp Feature: domain Description: RVT_N Location: 5841-6084 bp Feature: domain Description: RVT_N Location: 584 1-6084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6129-6756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6129-6756 bp Feature: domain Description: GIIM Note: maturase Location: 6816-7041 bp Feature: domain Description: GIIM Note: maturase Location: 6816-704 1 bp Feature: gene Location: 7313-7483 bp Feature: gene Location: 7539-7790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2971 (pfam11185), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)