myRT

myRT report for GCA_002877235.1_ASM287723v1

Download annotations/find similar RTs

Seq: MCXJ01000018.1 Vibrio lentus strain 10N.261.54.A2 10N.261.54.A2_contig_24, whole genome shotgun sequence (392590 bp)
Overview 1 RT 1: 10690-15762 bp 2 RT 2: 333523-344405 bp Neighborhood of RT #1 [10690, 16382] HTH_XRE RVT-Retrons REC Neighborhood of RT #2 [333523, 344405] Mrr_cat zf-C4_Topoisom dnaG RVT-UG2 Feature: gene Location: 10690-11232 bp Feature: gene Location: 11334-11546 bp Feature: domain Description: HTH_XRE Location: 11361-11532 bp Feature: domain Description: HTH_XRE Location: 1 1 361 -1 1 532 bp Feature: gene Location: 11836-14259 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12022-12673 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2022-1 2673 bp Feature: gene Location: 14263-14631 bp Feature: gene Location: 14631-16382 bp Feature: domain Description: REC Location: 15537-15762 bp Feature: domain Description: REC Location: 1 5537-1 5762 bp Feature: gene Location: 333523-334344 bp Feature: domain Description: Mrr_cat Location: 333823-334153 bp Feature: domain Description: Mrr_cat Location: 333823-3341 53 bp Feature: domain Description: zf-C4_Topoisom Location: 334225-334336 bp Feature: domain Description: zf-C4_Topoisom Location: 334225-334336 bp Feature: gene Location: 334820-335545 bp Feature: gene Location: 335906-343336 bp Feature: domain Description: dnaG Location: 335918-337076 bp Feature: domain Description: dnaG Location: 33591 8-337076 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 337781-338402 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 337781 -338402 bp Feature: gene Location: 343329-344195 bp Feature: gene Location: 344208-344405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, REC (smart00448), Mrr_cat (pfam04471), zf-C4_Topoisom (pfam01396), dnaG (TIGR01391), RVT-UG2

Seq: MCXJ01000028.1 Vibrio lentus strain 10N.261.54.A2 10N.261.54.A2_contig_33, whole genome shotgun sequence (15114 bp)
Overview 1 RT 1: 123-10287 bp Neighborhood of RT #1 [123, 10289] RVT_N RVT-GII GIIM TraD_Ftype TraI_TIGR Feature: gene Location: 123-266 bp Feature: gene Location: 501-1973 bp Feature: domain Description: RVT_N Location: 549-792 bp Feature: domain Description: RVT_N Location: 549-792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 837-1464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 837-1464 bp Feature: domain Description: GIIM Note: maturase Location: 1524-1749 bp Feature: domain Description: GIIM Note: maturase Location: 152 4-1749 bp Feature: gene Location: 2282-4321 bp Feature: domain Description: TraD_Ftype Location: 2294-4010 bp Feature: domain Description: TraD_Ftype Location: 2 2 94-4010 bp Feature: gene Location: 4506-10289 bp Feature: domain Description: TraI_TIGR Location: 4509-10287 bp Feature: domain Description: TraI_TIGR Location: 4509-102 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraD_Ftype (TIGR02759), TraI_TIGR (TIGR02760)