myRT

myRT report for GCA_002877445.1_ASM287744v1

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Seq: MCWX01000016.1 Vibrio lentus strain 10N.261.55.B3 10N.261.55.B3_contig_111, whole genome shotgun sequence (10977 bp)
Overview 1 RT 1: 986-5319 bp Neighborhood of RT #1 [986, 5336] RVT_N RVT-GII GIIM Cas6_I-F Csy3_I-F Feature: gene Location: 986-1117 bp Feature: gene Location: 1730-3202 bp Feature: domain Description: RVT_N Location: 1778-2021 bp Feature: domain Description: RVT_N Location: 1 778-2021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2066-2693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2066-2693 bp Feature: domain Description: GIIM Note: maturase Location: 2753-2978 bp Feature: domain Description: GIIM Note: maturase Location: 2753-2978 bp Feature: gene Location: 3690-4295 bp Feature: domain Description: Cas6_I-F Location: 3702-4287 bp Feature: domain Description: Cas6_I-F Location: 3702-4287 bp Feature: gene Location: 4305-5336 bp Feature: domain Description: Csy3_I-F Location: 4314-5319 bp Feature: domain Description: Csy3_I-F Location: 431 4-531 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Cas6_I-F (cl09835), Csy3_I-F (cl09832)

Seq: MCWX01000069.1 Vibrio lentus strain 10N.261.55.B3 10N.261.55.B3_contig_16, whole genome shotgun sequence (11128 bp)
Overview 1 RT 1: 4953-10626 bp Neighborhood of RT #1 [4953, 10626] RVT-UG5 nitrilase Feature: gene Location: 4953-5474 bp Feature: gene Location: 5606-6295 bp Feature: gene Location: 6910-9858 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 7414-7903 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 7414-7903 bp Feature: domain Description: nitrilase Location: 9196-9784 bp Feature: domain Description: nitrilase Location: 9196-9784 bp Feature: gene Location: 9891-10367 bp Feature: gene Location: 10444-10626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424)

Seq: MCWX01000105.1 Vibrio lentus strain 10N.261.55.B3 10N.261.55.B3_contig_41, whole genome shotgun sequence (62413 bp)
Overview 1 RT 1: 26735-32192 bp Neighborhood of RT #1 [26735, 32203] Big_1 Big_1 DUF1566 RVT-DGRs Avd_like trans_reg_C Feature: gene Location: 26735-29326 bp Feature: domain Description: Big_1 Location: 28316-28445 bp Feature: domain Description: Big_1 Location: 283 16-28445 bp Feature: domain Description: Big_1 Location: 28553-28736 bp Feature: domain Description: Big_1 Location: 28553 -2873 6 bp Feature: domain Description: DUF1566 Location: 29063-29315 bp Feature: domain Description: DUF1566 Location: 29063 -293 15 bp Feature: gene Location: 29415-29906 bp Feature: gene Location: 30268-31524 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30475-31177 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 0475-3 1177 bp Feature: gene Location: 31504-31878 bp Feature: domain Description: Avd_like Location: 31534-31864 bp Feature: domain Description: Avd_like Location: 3 153 4-3 1864 bp Feature: gene Location: 31910-32203 bp Feature: domain Description: trans_reg_C Location: 31973-32192 bp Feature: domain Description: trans_reg_C Location: 3 1973 -3 2192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Big_1 (pfam02369), DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376), trans_reg_C (cd00383)