myRT

myRT report for GCA_002877705.1_ASM287770v1

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Seq: MCXH01000020.1 Vibrio cyclitrophicus strain 10N.261.54.B5 10N.261.54.B5_contig_26, whole genome shotgun sequence (76729 bp)
Overview 1 RT 1: 1480-5867 bp Neighborhood of RT #1 [1480, 5896] DDE_Tnp_IS1595 RVT_N RVT-GII GIIM DUF45 Feature: gene Location: 1480-1770 bp Feature: gene Location: 2010-2387 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 2028-2382 bp Feature: domain Description: DDE_Tnp_IS1 595 Location: 2028-2382 bp Feature: gene Location: 2959-4431 bp Feature: RT Description: RVT_N Location: 3007-3247 bp Feature: RT Description: RVT_N Location: 3007-3247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3295-3922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3295-3922 bp Feature: domain Description: GIIM Note: maturase Location: 3979-4207 bp Feature: domain Description: GIIM Note: maturase Location: 3979-4207 bp Feature: gene Location: 4505-4780 bp Feature: gene Location: 5120-5896 bp Feature: domain Description: DUF45 Location: 5234-5867 bp Feature: domain Description: DUF45 Location: 5234-5867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1595 (pfam12762), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF45 (pfam01863)

Seq: MCXH01000056.1 Vibrio cyclitrophicus strain 10N.261.54.B5 10N.261.54.B5_contig_8, whole genome shotgun sequence (454696 bp)
Overview 1 RT 1: 403042-407980 bp Neighborhood of RT #1 [403042, 407997] group_II_RT_mat RVT-GII GIIM YhhI COG2984 PRK10060 Feature: gene Location: 403042-403197 bp Feature: gene Location: 403466-403696 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 403502-403691 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 403502 -403691 bp Feature: gene Location: 403689-404693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403695-404304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403695-404304 bp Feature: domain Description: GIIM Note: maturase Location: 404385-404607 bp Feature: domain Description: GIIM Note: maturase Location: 404385-404607 bp Feature: gene Location: 404776-404988 bp Feature: domain Description: YhhI Location: 404782-404908 bp Feature: domain Description: YhhI Location: 404782 -404908 bp Feature: gene Location: 405217-407997 bp Feature: domain Description: COG2984 Location: 405244-406096 bp Feature: domain Description: COG2 984 Location: 4052 44-406096 bp Feature: domain Description: PRK10060 Location: 406369-407980 bp Feature: domain Description: PRK10060 Location: 406369-407980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), YhhI (COG5433), COG2984 (ABC-type uncharacterized transport system, periplasmic component ), PRK10060 (cyclic di-GMP phosphodiesterase)