myRT

myRT report for GCA_002877725.1_ASM287772v1

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Seq: MCXM01000001.1 Vibrio lentus strain 10N.261.52.F7 10N.261.52.F7_contig_0, whole genome shotgun sequence (863796 bp)
Overview 1 RT 1: 139908-144980 bp 2 RT 2: 462756-473638 bp Neighborhood of RT #1 [139908, 145600] HTH_XRE RVT-Retrons REC Neighborhood of RT #2 [462756, 473638] Mrr_cat zf-C4_Topoisom dnaG RVT-UG2 Feature: gene Location: 139908-140450 bp Feature: gene Location: 140552-140764 bp Feature: domain Description: HTH_XRE Location: 140579-140750 bp Feature: domain Description: HTH_XRE Location: 1 40579-1 40750 bp Feature: gene Location: 141054-143477 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 141240-141891 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 41 240-1 41 891 bp Feature: gene Location: 143481-143849 bp Feature: gene Location: 143849-145600 bp Feature: domain Description: REC Location: 144755-144980 bp Feature: domain Description: REC Location: 1 44755-1 44980 bp Feature: gene Location: 462756-463577 bp Feature: domain Description: Mrr_cat Location: 463056-463386 bp Feature: domain Description: Mrr_cat Location: 463056-463386 bp Feature: domain Description: zf-C4_Topoisom Location: 463458-463569 bp Feature: domain Description: zf-C4_Topoisom Location: 463458-463569 bp Feature: gene Location: 464053-464778 bp Feature: gene Location: 465139-472569 bp Feature: domain Description: dnaG Location: 465151-466309 bp Feature: domain Description: dnaG Location: 4651 51 -466309 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 467014-467635 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 46701 4-467635 bp Feature: gene Location: 472562-473428 bp Feature: gene Location: 473441-473638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, REC (smart00448), Mrr_cat (pfam04471), zf-C4_Topoisom (pfam01396), dnaG (TIGR01391), RVT-UG2

Seq: MCXM01000037.1 Vibrio lentus strain 10N.261.52.F7 10N.261.52.F7_contig_41, whole genome shotgun sequence (18124 bp)
Overview 1 RT 1: 11349-16806 bp Neighborhood of RT #1 [11349, 16817] trans_reg_C Avd_like RVT-DGRs Big_1 Big_1 DUF1566 Feature: gene Location: 11349-11642 bp Feature: domain Description: trans_reg_C Location: 11412-11631 bp Feature: domain Description: trans_reg_C Location: 11412 -11631 bp Feature: gene Location: 11674-12048 bp Feature: domain Description: Avd_like Location: 11704-12034 bp Feature: domain Description: Avd_like Location: 11704-12 034 bp Feature: gene Location: 12028-13284 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12235-12937 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12 2 35-12 937 bp Feature: gene Location: 13646-14137 bp Feature: gene Location: 14226-16817 bp Feature: domain Description: Big_1 Location: 15807-15936 bp Feature: domain Description: Big_1 Location: 15807-15936 bp Feature: domain Description: Big_1 Location: 16044-16227 bp Feature: domain Description: Big_1 Location: 16044-162 2 7 bp Feature: domain Description: DUF1566 Location: 16554-16806 bp Feature: domain Description: DUF1566 Location: 16554-16806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), Avd_like (cd16376), RVT-DGRs, Big_1 (pfam02369), DUF1566 (pfam07603)

Seq: MCXM01000041.1 Vibrio lentus strain 10N.261.52.F7 10N.261.52.F7_contig_45, whole genome shotgun sequence (15116 bp)
Overview 1 RT 1: 4827-14993 bp Neighborhood of RT #1 [4827, 14993] TraI_TIGR TraD_Ftype RVT_N RVT-GII GIIM Feature: gene Location: 4827-10610 bp Feature: domain Description: TraI_TIGR Location: 4830-10608 bp Feature: domain Description: TraI_TIGR Location: 483 0-10608 bp Feature: gene Location: 10795-12834 bp Feature: domain Description: TraD_Ftype Location: 10807-12523 bp Feature: domain Description: TraD_Ftype Location: 10807-12523 bp Feature: gene Location: 13143-14774 bp Feature: domain Description: RVT_N Location: 13350-13593 bp Feature: domain Description: RVT_N Location: 13 3 50-13 593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13638-14265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 63 8-14265 bp Feature: domain Description: GIIM Note: maturase Location: 14325-14550 bp Feature: domain Description: GIIM Note: maturase Location: 143 25-14550 bp Feature: gene Location: 14850-14993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraI_TIGR (TIGR02760), TraD_Ftype (TIGR02759), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)