myRT

myRT report for GCA_002877745.1_ASM287774v1

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Seq: MCWP01000086.1 Vibrio cyclitrophicus strain 10N.261.55.F9 10N.261.55.F9_contig_175, whole genome shotgun sequence (464 bp)
Overview 1 RT 1: 1-457 bp Neighborhood of RT #1 [1, 462] RVT-GII Feature: gene Location: 1-462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130-457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 30-457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MCWP01000091.1 Vibrio cyclitrophicus strain 10N.261.55.F9 10N.261.55.F9_contig_18, whole genome shotgun sequence (2223 bp)
Overview 1 RT 1: 59-587 bp Neighborhood of RT #1 [59, 811] RVT-GII GIIM Feature: gene Location: 59-811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98-302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98-302 bp Feature: domain Description: GIIM Note: maturase Location: 359-587 bp Feature: domain Description: GIIM Note: maturase Location: 359-587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MCWP01000158.1 Vibrio cyclitrophicus strain 10N.261.55.F9 10N.261.55.F9_contig_47, whole genome shotgun sequence (29990 bp)
Overview 1 RT 1: 1-6075 bp Neighborhood of RT #1 [1, 6075] RVT-GII CSS-motif YjcC DDE_Tnp_Tn3 COG4644 RVT-GII GIIM COG5361 COG5361 Feature: gene Location: 1-162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16-106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16-106 bp Feature: gene Location: 255-1766 bp Feature: domain Description: CSS-motif Location: 426-657 bp Feature: domain Description: CSS-motif Location: 426-657 bp Feature: domain Description: YjcC Location: 972-1752 bp Feature: domain Description: YjcC Location: 972-1752 bp Feature: gene Location: 1950-2510 bp Feature: gene Location: 3014-3226 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3017-3182 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3 017-3 182 bp Feature: gene Location: 3390-3551 bp Feature: domain Description: COG4644 Location: 3393-3513 bp Feature: domain Description: COG4644 Location: 3 3 93 -3 513 bp Feature: gene Location: 3808-4395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3814-3946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 814-3 946 bp Feature: domain Description: GIIM Note: maturase Location: 3994-4189 bp Feature: domain Description: GIIM Note: maturase Location: 3 994-4189 bp Feature: gene Location: 4496-5605 bp Feature: domain Description: COG5361 Location: 4802-4955 bp Feature: domain Description: COG53 61 Location: 4802-4955 bp Feature: domain Description: COG5361 Location: 5042-5573 bp Feature: domain Description: COG53 61 Location: 5042-5573 bp Feature: gene Location: 5854-6075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, CSS-motif (pfam12792), YjcC (COG4943), DDE_Tnp_Tn3 (pfam01526), COG4644 (Transposase and inactivated derivatives, TnpA family ), GIIM (pfam08388), COG5361 (Uncharacterized conserved protein )

Seq: MCWP01000166.1 Vibrio cyclitrophicus strain 10N.261.55.F9 10N.261.55.F9_contig_54, whole genome shotgun sequence (114887 bp)
Overview 1 RT 1: 81685-90109 bp Neighborhood of RT #1 [81685, 90109] pheT AAA_15 RVT-Retrons MhpC Feature: gene Location: 81685-84072 bp Feature: domain Description: pheT Location: 81688-84070 bp Feature: domain Description: pheT Location: 81688-84 070 bp Feature: gene Location: 84288-86543 bp Feature: domain Description: AAA_15 Location: 84291-85284 bp Feature: domain Description: AAA_15 Location: 84 291-85284 bp Feature: gene Location: 86681-87796 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86849-87407 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8684 9-874 07 bp Feature: gene Location: 88011-88883 bp Feature: domain Description: MhpC Location: 88116-88863 bp Feature: domain Description: MhpC Location: 88116-88863 bp Feature: gene Location: 89162-90109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pheT (PRK09616), AAA_15 (pfam13175), RVT-Retrons, MhpC (COG0596)

Seq: MCWP01000174.1 Vibrio cyclitrophicus strain 10N.261.55.F9 10N.261.55.F9_contig_61, whole genome shotgun sequence (3809 bp)
Overview 1 RT 1: 962-3614 bp Neighborhood of RT #1 [962, 3808] OMP_b-brl OmpA Fimbrial_K88 RVT-UG4 Feature: gene Location: 962-1951 bp Feature: domain Description: OMP_b-brl Location: 1007-1511 bp Feature: domain Description: OMP_b-brl Location: 1007-15 11 bp Feature: domain Description: OmpA Location: 1511-1940 bp Feature: domain Description: OmpA Location: 15 11-1940 bp Feature: gene Location: 1952-2758 bp Feature: domain Description: Fimbrial_K88 Location: 2060-2354 bp Feature: domain Description: Fimbrial_K88 Location: 2060-235 4 bp Feature: gene Location: 2825-3808 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3167-3614 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3167-3614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_b-brl (pfam13505), OmpA (pfam00691), Fimbrial_K88 (pfam02432), RVT-UG4