myRT

myRT report for GCA_002878595.1_ASM287859v1

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Seq: MCWU01000010.1 Vibrio splendidus strain 10N.261.55.E11 10N.261.55.E11_contig_17, whole genome shotgun sequence (77689 bp)
Overview 1 RT 1: 50863-56002 bp Neighborhood of RT #1 [50863, 56103] RVT-UG2 INT_RitA_C_like HsdM_N Feature: gene Location: 50863-51507 bp Feature: gene Location: 51737-52936 bp Feature: gene Location: 53501-54811 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 53702-54515 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 53702-5451 5 bp Feature: gene Location: 54890-55486 bp Feature: domain Description: INT_RitA_C_like Location: 54938-55469 bp Feature: domain Description: INT_RitA_C_like Location: 54938-55469 bp Feature: gene Location: 55597-56103 bp Feature: domain Description: HsdM_N Location: 55633-56002 bp Feature: domain Description: HsdM_N Location: 55633-56002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, INT_RitA_C_like (cd01188), HsdM_N (pfam12161)

Seq: MCWU01000018.1 Vibrio splendidus strain 10N.261.55.E11 10N.261.55.E11_contig_24, whole genome shotgun sequence (198725 bp)
Overview 1 RT 1: 7266-13551 bp Neighborhood of RT #1 [7266, 13571] viomycin_VioC viomycin_VioC ARO8 RVT_N RVT-GII GIIM LacI PBP1_LacI_like_9 Feature: gene Location: 7266-8285 bp Feature: domain Description: viomycin_VioC Location: 7422-7941 bp Feature: domain Description: viomycin_VioC Location: 742 2 -7941 bp Feature: domain Description: viomycin_VioC Location: 8031-8220 bp Feature: domain Description: viomycin_VioC Location: 8031-82 2 0 bp Feature: gene Location: 8469-9809 bp Feature: domain Description: ARO8 Location: 8490-9777 bp Feature: domain Description: ARO8 Location: 8490-9777 bp Feature: gene Location: 10171-11547 bp Feature: domain Description: RVT_N Location: 10174-10366 bp Feature: domain Description: RVT_N Location: 10174-10366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10411-11038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10411-11038 bp Feature: domain Description: GIIM Note: maturase Location: 11098-11323 bp Feature: domain Description: GIIM Note: maturase Location: 11098-1132 3 bp Feature: gene Location: 11680-12210 bp Feature: gene Location: 12558-13571 bp Feature: domain Description: LacI Location: 12585-12720 bp Feature: domain Description: LacI Location: 12 585-12 72 0 bp Feature: domain Description: PBP1_LacI_like_9 Location: 12759-13551 bp Feature: domain Description: PBP1_LacI_like_9 Location: 12 759-13551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT viomycin_VioC (TIGR03946), ARO8 (COG1167), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_LacI_like_9

Seq: MCWU01000028.1 Vibrio splendidus strain 10N.261.55.E11 10N.261.55.E11_contig_33, whole genome shotgun sequence (91171 bp)
Overview 1 RT 1: 28752-34107 bp Neighborhood of RT #1 [28752, 34107] RVT-Retrons Feature: gene Location: 28752-29678 bp Feature: gene Location: 29972-30172 bp Feature: gene Location: 30555-31466 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30654-31236 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 0654-3 123 6 bp Feature: gene Location: 31466-32452 bp Feature: gene Location: 32800-34107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: MCWU01000037.1 Vibrio splendidus strain 10N.261.55.E11 10N.261.55.E11_contig_41, whole genome shotgun sequence (44795 bp)
Overview 1 RT 1: 7597-17995 bp Neighborhood of RT #1 [7597, 17997] dnaG RVT-UNC PRK05943 Feature: gene Location: 7597-7806 bp Feature: gene Location: 7880-8605 bp Feature: gene Location: 8969-16414 bp Feature: domain Description: dnaG Location: 8981-10127 bp Feature: domain Description: dnaG Location: 8981-10127 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 10829-11465 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 10829-114 65 bp Feature: gene Location: 16417-17289 bp Feature: gene Location: 17719-17997 bp Feature: domain Description: PRK05943 Location: 17722-17995 bp Feature: domain Description: PRK0594 3 Location: 17722-17995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG2/RVT-UG10/RVT-UG19/RVT-UG1(RVT-UNC), PRK05943 (50S ribosomal protein L25; Reviewed)