myRT

myRT report for GCA_002879865.1_ASM287986v1

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Seq: PNXY01000012.1 Paraburkholderia rhynchosiae strain WSM 3937 NODE_12_length_226289_cov_21.3706_ID_4934, whole genome shotgun sequence (226289 bp)
Overview 1 RT 1: 37739-42725 bp Neighborhood of RT #1 [37739, 42730] DUF3303 RVT-GII PRK01663 PRK06292 Feature: gene Location: 37739-37870 bp Feature: gene Location: 38568-38882 bp Feature: domain Description: DUF3303 Location: 38574-38832 bp Feature: domain Description: DUF3303 Location: 38574-38832 bp Feature: gene Location: 39123-39377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39129-39249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391 29-39249 bp Feature: gene Location: 39716-41068 bp Feature: domain Description: PRK01663 Location: 39728-40994 bp Feature: domain Description: PRK01 663 Location: 39728-40994 bp Feature: gene Location: 41348-42730 bp Feature: domain Description: PRK06292 Location: 41363-42725 bp Feature: domain Description: PRK06292 Location: 41 363-42725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3303 (pfam11746), RVT-GII, PRK01663 (C4-dicarboxylate transporter DctA; Reviewed), PRK06292 (dihydrolipoamide dehydrogenase; Validated)

Seq: PNXY01000016.1 Paraburkholderia rhynchosiae strain WSM 3937 NODE_16_length_163497_cov_22.6368_ID_4942, whole genome shotgun sequence (163497 bp)
Overview 1 RT 1: 37196-47243 bp Neighborhood of RT #1 [37196, 47266] COG3547 RVT-GII GIIM COG3666 DDE_Tnp_1 PBP2_HisJ_LAO RVT-GII PRK08300 PRK08195 Feature: gene Location: 37196-38218 bp Feature: domain Description: COG3547 Location: 37217-38162 bp Feature: domain Description: COG3547 Location: 372 17-38162 bp Feature: gene Location: 38342-38617 bp Feature: gene Location: 38706-40262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39222-39876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392 2 2 -39876 bp Feature: domain Description: GIIM Note: maturase Location: 39960-40164 bp Feature: domain Description: GIIM Note: maturase Location: 39960-40164 bp Feature: gene Location: 40400-41845 bp Feature: domain Description: COG3666 Location: 40412-40886 bp Feature: domain Description: COG3666 Location: 40412 -40886 bp Feature: domain Description: DDE_Tnp_1 Location: 41096-41780 bp Feature: domain Description: DDE_Tnp_1 Location: 41096-41780 bp Feature: gene Location: 41881-42549 bp Feature: domain Description: PBP2_HisJ_LAO Location: 41968-42460 bp Feature: domain Description: PBP2 _HisJ_LAO Location: 41968-42 460 bp Feature: gene Location: 42556-42858 bp Feature: gene Location: 42998-43198 bp Feature: gene Location: 43218-44726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43644-44334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43644-44334 bp Feature: gene Location: 45360-46244 bp Feature: domain Description: PRK08300 Location: 45372-46215 bp Feature: domain Description: PRK08300 Location: 45372 -462 15 bp Feature: gene Location: 46241-47266 bp Feature: domain Description: PRK08195 Location: 46256-47243 bp Feature: domain Description: PRK08195 Location: 462 56-472 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), COG3666 (Transposase ), DDE_Tnp_1 (pfam01609), PBP2_HisJ_LAO (cd13703), PRK08300 (acetaldehyde dehydrogenase; Validated), PRK08195 (4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated)

Seq: PNXY01000020.1 Paraburkholderia rhynchosiae strain WSM 3937 NODE_20_length_144794_cov_22.3389_ID_4950, whole genome shotgun sequence (144794 bp)
Overview 1 RT 1: 45389-49473 bp Neighborhood of RT #1 [45389, 49473] COG3547 RVT-GII GIIM Feature: gene Location: 45389-45901 bp Feature: gene Location: 46781-47773 bp Feature: domain Description: COG3547 Location: 46820-47747 bp Feature: domain Description: COG3 547 Location: 46820-47747 bp Feature: gene Location: 47822-48781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48071-48734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48071-4873 4 bp Feature: gene Location: 48808-49104 bp Feature: domain Description: GIIM Note: maturase Location: 48814-49018 bp Feature: domain Description: GIIM Note: maturase Location: 48814-49018 bp Feature: gene Location: 49132-49473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: PNXY01000026.1 Paraburkholderia rhynchosiae strain WSM 3937 NODE_26_length_101626_cov_29.5746_ID_4962, whole genome shotgun sequence (101626 bp)
Overview 1 RT 1: 20643-23714 bp Neighborhood of RT #1 [20643, 23714] HNH_3 RVT-DGRs Avd_like Feature: gene Location: 20643-20819 bp Feature: gene Location: 20878-21525 bp Feature: domain Description: HNH_3 Location: 21304-21433 bp Feature: domain Description: HNH_3 Location: 21304 -214 33 bp Feature: gene Location: 21522-22871 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21954-22641 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21954 -2264 1 bp Feature: gene Location: 22864-23238 bp Feature: domain Description: Avd_like Location: 22891-23197 bp Feature: domain Description: Avd_like Location: 22891-23197 bp Feature: gene Location: 23256-23714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH_3 (pfam13392), RVT-DGRs, Avd_like (cd16376)

Seq: PNXY01000002.1 Paraburkholderia rhynchosiae strain WSM 3937 NODE_2_length_472127_cov_22.1612_ID_4914, whole genome shotgun sequence (472127 bp)
Overview 1 RT 1: 276572-287532 bp 2 RT 2: 311588-315345 bp 3 RT 3: 362706-366088 bp Neighborhood of RT #1 [276572, 287532] HTH_38 Tra8 DUF772 dnaG RVT-UNC Neighborhood of RT #2 [311588, 315345] DDE_Tnp_1_6 GIIM RVT-GII nifA Neighborhood of RT #3 [362706, 366132] nodulat_NodC RVT-GII DDE_Tnp_1 INT_P4_C Feature: gene Location: 276572-277732 bp Feature: domain Description: HTH_38 Location: 276632-276695 bp Feature: domain Description: HTH_38 Location: 276632-276695 bp Feature: domain Description: Tra8 Location: 276758-277724 bp Feature: domain Description: Tra8 Location: 27675 8-277724 bp Feature: gene Location: 277835-278044 bp Feature: domain Description: DUF772 Location: 277886-278006 bp Feature: domain Description: DUF772 Location: 277886-278006 bp Feature: gene Location: 278182-285954 bp Feature: domain Description: dnaG Location: 278197-279421 bp Feature: domain Description: dnaG Location: 278197-279421 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 280297-280810 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 280297-280810 bp Feature: gene Location: 286118-286450 bp Feature: gene Location: 286798-287532 bp Feature: gene Location: 311588-312115 bp Feature: domain Description: DDE_Tnp_1_6 Location: 311819-311990 bp Feature: domain Description: DDE_Tnp_1_6 Location: 311819-311990 bp Feature: gene Location: 312298-312591 bp Feature: domain Description: GIIM Note: maturase Location: 312304-312511 bp Feature: domain Description: GIIM Note: maturase Location: 312304-3125 11 bp Feature: gene Location: 312716-312865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312743-312863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312743-312863 bp Feature: gene Location: 313011-314906 bp Feature: domain Description: nifA Location: 313227-314904 bp Feature: domain Description: nifA Location: 313227-314904 bp Feature: gene Location: 315139-315345 bp Feature: gene Location: 362706-364064 bp Feature: domain Description: nodulat_NodC Location: 362715-363891 bp Feature: domain Description: nodulat_NodC Location: 362715 -363891 bp Feature: gene Location: 364214-364915 bp Feature: gene Location: 365172-365309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365178-365292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365 178-365 292 bp Feature: gene Location: 365435-365710 bp Feature: domain Description: DDE_Tnp_1 Location: 365501-365666 bp Feature: domain Description: DDE_Tnp_1 Location: 365 5 01-365 666 bp Feature: gene Location: 365839-366132 bp Feature: domain Description: INT_P4_C Location: 365971-366088 bp Feature: domain Description: INT_P4_C Location: 365 971-366088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), DUF772 (pfam05598), dnaG (TIGR01391), RVT-UG25/RVT-DGRs/RVT-UG10/RVT-UG17(RVT-UNC), DDE_Tnp_1_6 (pfam13751), GIIM (pfam08388), RVT-GII, nifA (TIGR01817), nodulat_NodC (TIGR04242)
DDE_Tnp_1 (pfam01609), INT_P4_C (cd00801)

Seq: PNXY01000042.1 Paraburkholderia rhynchosiae strain WSM 3937 NODE_42_length_41612_cov_25.2023_ID_4994, whole genome shotgun sequence (41612 bp)
Overview 1 RT 1: 6096-12556 bp Neighborhood of RT #1 [6096, 12597] COG3547 RVT_N RVT-GII GIIM HNH DUF3701 XerC recomb_XerC Feature: gene Location: 6096-6911 bp Feature: gene Location: 7097-8119 bp Feature: domain Description: COG3547 Location: 7112-8072 bp Feature: domain Description: COG3547 Location: 7112-8072 bp Feature: gene Location: 8895-10763 bp Feature: domain Description: RVT_N Location: 9114-9357 bp Feature: domain Description: RVT_N Location: 9114-9357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9402-10041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9402-10041 bp Feature: domain Description: GIIM Note: maturase Location: 10092-10326 bp Feature: domain Description: GIIM Note: maturase Location: 10092-10326 bp Feature: domain Description: HNH Note: nucleases Location: 10584-10710 bp Feature: domain Description: HNH Note: nucleases Location: 10584-10710 bp Feature: gene Location: 10881-12308 bp Feature: domain Description: DUF3701 Location: 11199-11469 bp Feature: domain Description: DUF3701 Location: 11199-1146 9 bp Feature: domain Description: XerC Location: 11805-12246 bp Feature: domain Description: XerC Location: 11805-12246 bp Feature: gene Location: 12292-12597 bp Feature: domain Description: recomb_XerC Location: 12409-12556 bp Feature: domain Description: recomb_XerC Location: 12409-12556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), DUF3701 (pfam12482), XerC (COG4973), recomb_XerC (TIGR02224)

Seq: PNXY01000005.1 Paraburkholderia rhynchosiae strain WSM 3937 NODE_5_length_363181_cov_22.7646_ID_4920, whole genome shotgun sequence (363181 bp)
Overview 1 RT 1: 27984-35803 bp Neighborhood of RT #1 [27984, 35805] DciA RVT_N RVT-GII GIIM HNHc PRK12904 argJ Feature: gene Location: 27984-28559 bp Feature: domain Description: DciA Location: 28152-28398 bp Feature: domain Description: DciA Location: 28152-28398 bp Feature: gene Location: 28842-29039 bp Feature: gene Location: 29686-31386 bp Feature: domain Description: RVT_N Location: 29743-29986 bp Feature: domain Description: RVT_N Location: 297 43-29986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30031-30679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30031-3067 9 bp Feature: domain Description: GIIM Note: maturase Location: 30733-30964 bp Feature: domain Description: GIIM Note: maturase Location: 307 33-30964 bp Feature: domain Description: HNHc Note: nucleases Location: 31180-31348 bp Feature: domain Description: HNHc Note: nucleases Location: 31180-31348 bp Feature: gene Location: 31589-34399 bp Feature: domain Description: PRK12904 Location: 31601-34391 bp Feature: domain Description: PRK12904 Location: 31601-34391 bp Feature: gene Location: 34564-35805 bp Feature: domain Description: argJ Location: 34603-35803 bp Feature: domain Description: argJ Location: 34603-35803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DciA, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK12904 (preprotein translocase subunit SecA; Reviewed), argJ (PRK05388)