myRT

myRT report for GCA_002881635.1_FW305-47B

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Seq: PODJ01000002.1 Pseudomonas sp. FW305-47B NODE_2_length_250728_cov_39.9573, whole genome shotgun sequence (250728 bp)
Overview 1 RT 1: 188336-192159 bp Neighborhood of RT #1 [188336, 192182] PcbC GDH_like_2 RVT-GII YccA_like Lrp Feature: gene Location: 188336-189316 bp Feature: domain Description: PcbC Location: 188387-189290 bp Feature: domain Description: PcbC Location: 1 88387-1 89290 bp Feature: gene Location: 189327-190253 bp Feature: domain Description: GDH_like_2 Location: 189330-190242 bp Feature: domain Description: GDH_like_2 Location: 1 89330-1 90242 bp Feature: gene Location: 190309-190479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190321-190411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 90321 -1 9041 1 bp Feature: gene Location: 191008-191679 bp Feature: domain Description: YccA_like Location: 191062-191668 bp Feature: domain Description: YccA_like Location: 1 91 062-1 91 668 bp Feature: gene Location: 191745-192182 bp Feature: domain Description: Lrp Location: 191751-192159 bp Feature: domain Description: Lrp Location: 1 91 751 -1 921 59 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PcbC (COG3491), GDH_like_2 (cd12164), RVT-GII, YccA_like (cd10433), Lrp (COG1522)

Seq: PODJ01000073.1 Pseudomonas sp. FW305-47B NODE_73_length_10962_cov_33.0646, whole genome shotgun sequence (10962 bp)
Overview 1 RT 1: 3-7186 bp Neighborhood of RT #1 [3, 7186] InsE RVT-GII TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM Feature: gene Location: 3-491 bp Feature: gene Location: 714-890 bp Feature: domain Description: InsE Location: 717-876 bp Feature: domain Description: InsE Location: 717-876 bp Feature: gene Location: 938-2704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1622-2312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 2 -2 312 bp Feature: gene Location: 2983-3465 bp Feature: domain Description: TnpB_IS66 Location: 3241-3448 bp Feature: domain Description: TnpB_IS66 Location: 32 41-3448 bp Feature: gene Location: 3639-4121 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3774-3978 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3774-3978 bp Feature: domain Description: zf-IS66 Location: 4005-4119 bp Feature: domain Description: zf-IS66 Location: 4005-4119 bp Feature: gene Location: 4206-4967 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4209-4947 bp Feature: domain Description: DDE_Tnp_IS66 Location: 42 09-4947 bp Feature: gene Location: 5524-5874 bp Feature: RT Description: RVT_N Location: 5569-5806 bp Feature: RT Description: RVT_N Location: 5569-5806 bp Feature: gene Location: 6063-6455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6069-6438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6069-6438 bp Feature: gene Location: 6572-6868 bp Feature: domain Description: GIIM Note: maturase Location: 6581-6779 bp Feature: domain Description: GIIM Note: maturase Location: 6581-6779 bp Feature: gene Location: 6965-7186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), InsE (COG2963), RVT-GII, DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), GIIM (pfam08388)