myRT

myRT report for GCA_002881715.1_FW305-20

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Seq: PODL01000001.1 Pseudomonas sp. FW305-20 NODE_1_length_326619_cov_43.7986, whole genome shotgun sequence (326619 bp)
Overview 1 RT 1: 134999-138316 bp Neighborhood of RT #1 [134999, 138342] YccA_like RVT-GII GDH_like_2 PcbC Feature: gene Location: 134999-135670 bp Feature: domain Description: YccA_like Location: 135053-135659 bp Feature: domain Description: YccA_like Location: 1 35053-1 35659 bp Feature: gene Location: 135772-135954 bp Feature: gene Location: 136199-136411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136205-136343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36205-1 36343 bp Feature: gene Location: 136425-137351 bp Feature: domain Description: GDH_like_2 Location: 136428-137340 bp Feature: domain Description: GDH_like_2 Location: 1 36428-1 37340 bp Feature: gene Location: 137362-138342 bp Feature: domain Description: PcbC Location: 137413-138316 bp Feature: domain Description: PcbC Location: 1 3741 3-1 3831 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccA_like (cd10433), RVT-GII, GDH_like_2 (cd12164), PcbC (COG3491)

Seq: PODL01000071.1 Pseudomonas sp. FW305-20 NODE_71_length_10967_cov_35.2774, whole genome shotgun sequence (10967 bp)
Overview 1 RT 1: 1-7199 bp Neighborhood of RT #1 [1, 7199] InsE RVT-GII TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM Feature: gene Location: 1-504 bp Feature: gene Location: 727-903 bp Feature: domain Description: InsE Location: 730-889 bp Feature: domain Description: InsE Location: 730-889 bp Feature: gene Location: 951-2717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1635-2325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1635-2 32 5 bp Feature: gene Location: 2996-3478 bp Feature: domain Description: TnpB_IS66 Location: 3254-3461 bp Feature: domain Description: TnpB_IS66 Location: 32 54-3461 bp Feature: gene Location: 3652-4134 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3787-3991 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3787-3991 bp Feature: domain Description: zf-IS66 Location: 4018-4132 bp Feature: domain Description: zf-IS66 Location: 4018-4132 bp Feature: gene Location: 4219-4980 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4222-4960 bp Feature: domain Description: DDE_Tnp_IS66 Location: 42 2 2 -4960 bp Feature: gene Location: 5537-5887 bp Feature: RT Description: RVT_N Location: 5582-5819 bp Feature: RT Description: RVT_N Location: 5582 -5819 bp Feature: gene Location: 6076-6468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6082-6451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6082 -6451 bp Feature: gene Location: 6585-6881 bp Feature: domain Description: GIIM Note: maturase Location: 6594-6792 bp Feature: domain Description: GIIM Note: maturase Location: 6594-6792 bp Feature: gene Location: 6978-7199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), InsE (COG2963), RVT-GII, DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), GIIM (pfam08388)