myRT

myRT report for GCA_002881725.1_FW305-122

Download annotations/find similar RTs

Seq: PODM01000001.1 Pseudomonas sp. FW305-122 NODE_1_length_295023_cov_34.3385, whole genome shotgun sequence (295023 bp)
Overview 1 RT 1: 188352-192175 bp Neighborhood of RT #1 [188352, 192198] PcbC GDH_like_2 RVT-GII YccA_like Lrp Feature: gene Location: 188352-189332 bp Feature: domain Description: PcbC Location: 188403-189306 bp Feature: domain Description: PcbC Location: 1 88403-1 89306 bp Feature: gene Location: 189343-190269 bp Feature: domain Description: GDH_like_2 Location: 189346-190258 bp Feature: domain Description: GDH_like_2 Location: 1 89346-1 90258 bp Feature: gene Location: 190325-190495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190337-190427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 90337-1 90427 bp Feature: gene Location: 191024-191695 bp Feature: domain Description: YccA_like Location: 191078-191684 bp Feature: domain Description: YccA_like Location: 1 91 078-1 91 684 bp Feature: gene Location: 191761-192198 bp Feature: domain Description: Lrp Location: 191767-192175 bp Feature: domain Description: Lrp Location: 1 91 767-1 921 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PcbC (COG3491), GDH_like_2 (cd12164), RVT-GII, YccA_like (cd10433), Lrp (COG1522)

Seq: PODM01000081.1 Pseudomonas sp. FW305-122 NODE_81_length_10967_cov_27.276, whole genome shotgun sequence (10967 bp)
Overview 1 RT 1: 3778-10964 bp Neighborhood of RT #1 [3778, 10964] GIIM RVT-GII RVT_N DDE_Tnp_IS66 LZ_Tnp_IS66 zf-IS66 TnpB_IS66 RVT-GII InsE Feature: gene Location: 3778-4083 bp Feature: gene Location: 4096-4392 bp Feature: domain Description: GIIM Note: maturase Location: 4105-4303 bp Feature: domain Description: GIIM Note: maturase Location: 4105-4303 bp Feature: gene Location: 4509-4931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4515-4914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4515-4914 bp Feature: gene Location: 5090-5440 bp Feature: RT Description: RVT_N Location: 5135-5372 bp Feature: RT Description: RVT_N Location: 5135-5372 bp Feature: gene Location: 5997-6758 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6000-6738 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6000-6738 bp Feature: gene Location: 6843-7325 bp Feature: domain Description: LZ_Tnp_IS66 Location: 6978-7182 bp Feature: domain Description: LZ_Tnp_IS66 Location: 6978-7182 bp Feature: domain Description: zf-IS66 Location: 7209-7323 bp Feature: domain Description: zf-IS66 Location: 72 09-732 3 bp Feature: gene Location: 7499-7744 bp Feature: domain Description: TnpB_IS66 Location: 7520-7727 bp Feature: domain Description: TnpB_IS66 Location: 752 0-772 7 bp Feature: gene Location: 8260-10026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8944-9634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8944-9634 bp Feature: gene Location: 10074-10250 bp Feature: domain Description: InsE Location: 10077-10236 bp Feature: domain Description: InsE Location: 10077-102 36 bp Feature: gene Location: 10467-10964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, RVT_N (pfam13655), DDE_Tnp_IS66 (pfam03050), InsE (COG2963), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), TnpB_IS66 (pfam05717)