myRT

myRT report for GCA_002881815.1_GP01-A3

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Seq: PODT01000010.1 Pseudomonas sp. GP01-A3 NODE_10_length_105082_cov_27.2675, whole genome shotgun sequence (105082 bp)
Overview 1 RT 1: 20154-25396 bp Neighborhood of RT #1 [20154, 25425] ACR3 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 20154-21116 bp Feature: domain Description: ACR3 Location: 20169-21096 bp Feature: domain Description: ACR3 Location: 201 69-21 096 bp Feature: gene Location: 21155-21289 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21161-21272 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 61 -21 272 bp Feature: gene Location: 21481-23142 bp Feature: RT Description: RVT_N Location: 21526-21769 bp Feature: RT Description: RVT_N Location: 21 526-21 769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21814-22450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 81 4-22450 bp Feature: domain Description: GIIM Note: maturase Location: 22507-22735 bp Feature: domain Description: GIIM Note: maturase Location: 22507-22735 bp Feature: gene Location: 23700-25028 bp Feature: domain Description: LZ_Tnp_IS66 Location: 23832-24039 bp Feature: domain Description: LZ_Tnp_IS66 Location: 23832-24039 bp Feature: domain Description: zf-IS66 Location: 24078-24192 bp Feature: domain Description: zf-IS66 Location: 24078-241 92 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24234-25008 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24234-25008 bp Feature: gene Location: 25090-25425 bp Feature: domain Description: TnpB_IS66 Location: 25108-25396 bp Feature: domain Description: TnpB_IS66 Location: 251 08-25396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACR3 (COG0798), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)