myRT

myRT report for GCA_002882255.1_FW507-14D01

Download annotations/find similar RTs

Seq: POFD01000120.1 Pseudomonas sp. FW507-14D01 NODE_120_length_1842_cov_47.4725, whole genome shotgun sequence (1842 bp)
Overview 1 RT 1: 5-1595 bp Neighborhood of RT #1 [5, 1753] RVT-GII GIIM Feature: gene Location: 5-382 bp Feature: gene Location: 461-1753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722-1337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722-1 337 bp Feature: domain Description: GIIM Note: maturase Location: 1391-1595 bp Feature: domain Description: GIIM Note: maturase Location: 1 391 -1 595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: POFD01000027.1 Pseudomonas sp. FW507-14D01 NODE_27_length_94692_cov_27.819, whole genome shotgun sequence (94692 bp)
Overview 1 RT 1: 64226-67567 bp Neighborhood of RT #1 [64226, 67581] Resolvase Recombinase Zn_ribbon_recom RVT-GII DUF2790 Feature: gene Location: 64226-64693 bp Feature: gene Location: 64662-66101 bp Feature: domain Description: Resolvase Location: 64683-65121 bp Feature: domain Description: Resolvase Location: 64683-6512 1 bp Feature: domain Description: Recombinase Location: 65217-65574 bp Feature: domain Description: Recombinase Location: 652 17-65574 bp Feature: domain Description: Zn_ribbon_recom Location: 65613-65817 bp Feature: domain Description: Zn_ribbon_recom Location: 65613-65817 bp Feature: gene Location: 66439-66687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66442-66664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66442 -66664 bp Feature: gene Location: 66858-67067 bp Feature: gene Location: 67249-67581 bp Feature: domain Description: DUF2790 Location: 67339-67567 bp Feature: domain Description: DUF2 790 Location: 67339-67567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII, DUF2790 (pfam10976)

Seq: POFD01000005.1 Pseudomonas sp. FW507-14D01 NODE_5_length_176325_cov_25.4895, whole genome shotgun sequence (176325 bp)
Overview 1 RT 1: 4733-8618 bp Neighborhood of RT #1 [4733, 8618] DDE_Tnp_IS66_C RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom Feature: gene Location: 4733-4912 bp Feature: gene Location: 4916-5050 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4922-5033 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4922-503 3 bp Feature: gene Location: 5230-6279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5302-5575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 02-5575 bp Feature: domain Description: GIIM Note: maturase Location: 5632-5860 bp Feature: domain Description: GIIM Note: maturase Location: 563 2-5860 bp Feature: gene Location: 6530-8425 bp Feature: domain Description: Resolvase Location: 6551-6989 bp Feature: domain Description: Resolvase Location: 6551-6989 bp Feature: domain Description: Recombinase Location: 7085-7442 bp Feature: domain Description: Recombinase Location: 7085-7442 bp Feature: domain Description: Zn_ribbon_recom Location: 7481-7685 bp Feature: domain Description: Zn_ribbon_recom Location: 7481-7685 bp Feature: gene Location: 8466-8618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)