myRT

myRT report for GCA_002882515.1_MPR-R2A7

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Seq: POFR01000103.1 Pseudomonas sp. MPR-R2A7 NODE_103_length_24376_cov_38.3624, whole genome shotgun sequence (24376 bp)
Overview 1 RT 1: 15364-20595 bp Neighborhood of RT #1 [15364, 20678] PRK10431 PRK10319 IS5 RVT-GII GIIM IS5 ABC_phnC Feature: gene Location: 15364-16428 bp Feature: domain Description: PRK10431 Location: 15430-15796 bp Feature: domain Description: PRK1 0431 Location: 1 5430-1 5796 bp Feature: domain Description: PRK10319 Location: 15826-16414 bp Feature: domain Description: PRK1 031 9 Location: 1 5826-1 641 4 bp Feature: gene Location: 16559-17017 bp Feature: domain Description: IS5 Location: 16562-16991 bp Feature: domain Description: IS5 Location: 1 6562-1 6991 bp Feature: gene Location: 17089-18357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17302-17959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7302-1 7959 bp Feature: domain Description: GIIM Note: maturase Location: 18037-18259 bp Feature: domain Description: GIIM Note: maturase Location: 1 8037-1 8259 bp Feature: gene Location: 18850-19389 bp Feature: domain Description: IS5 Location: 19039-19366 bp Feature: domain Description: IS5 Location: 1 9039-1 9366 bp Feature: gene Location: 19851-20678 bp Feature: domain Description: ABC_phnC Location: 19881-20595 bp Feature: domain Description: ABC_phnC Location: 1 9881 -20595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10431 (N-acetylmuramoyl-l-alanine amidase II; Provisional), PRK10319 (N-acetylmuramoyl-L-alanine amidase AmiA), IS5 (COG3039), RVT-GII, GIIM (pfam08388), ABC_phnC (TIGR02315)

Seq: POFR01000002.1 Pseudomonas sp. MPR-R2A7 NODE_2_length_186816_cov_24.0564, whole genome shotgun sequence (186816 bp)
Overview 1 RT 1: 98039-105242 bp Neighborhood of RT #1 [98039, 105262] Porin_O_P RVT-GII GIIM Hydantoinase_B HyuA Feature: gene Location: 98039-99217 bp Feature: domain Description: Porin_O_P Location: 98264-99101 bp Feature: domain Description: Porin_O_P Location: 982 64-99101 bp Feature: gene Location: 99398-99877 bp Feature: gene Location: 99882-101090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100074-100689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100074-100689 bp Feature: domain Description: GIIM Note: maturase Location: 100743-100971 bp Feature: domain Description: GIIM Note: maturase Location: 100743-100971 bp Feature: gene Location: 101391-103136 bp Feature: domain Description: Hydantoinase_B Location: 101406-102990 bp Feature: domain Description: Hydantoinase_B Location: 101406-102 990 bp Feature: gene Location: 103172-105262 bp Feature: domain Description: HyuA Location: 103187-105242 bp Feature: domain Description: HyuA Location: 103187-1052 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hydantoinase_B (pfam02538), HyuA (COG0145), Porin_O_P (pfam07396), RVT-GII, GIIM (pfam08388)

Seq: POFR01000043.1 Pseudomonas sp. MPR-R2A7 NODE_43_length_58160_cov_33.8904, whole genome shotgun sequence (58160 bp)
Overview 1 RT 1: 34315-41632 bp Neighborhood of RT #1 [34315, 41943] groES groEL RVT_N RVT-GII GIIM HNHc COG3907 LTA_synthase Feature: gene Location: 34315-34611 bp Feature: domain Description: groES Location: 34324-34606 bp Feature: domain Description: groES Location: 3 43 24-3 4606 bp Feature: gene Location: 34662-36308 bp Feature: domain Description: groEL Location: 34668-36291 bp Feature: domain Description: groEL Location: 3 4668-3 6291 bp Feature: gene Location: 37343-39034 bp Feature: RT Description: RVT_N Location: 37397-37637 bp Feature: RT Description: RVT_N Location: 3 73 97-3 763 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37685-38330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7685-3 83 3 0 bp Feature: domain Description: GIIM Note: maturase Location: 38381-38615 bp Feature: domain Description: GIIM Note: maturase Location: 3 83 81-3 8615 bp Feature: domain Description: HNHc Note: nucleases Location: 38834-38987 bp Feature: domain Description: HNHc Note: nucleases Location: 3 883 4-3 8987 bp Feature: gene Location: 39208-39945 bp Feature: domain Description: COG3907 Location: 39226-39922 bp Feature: domain Description: COG3 907 Location: 3 9226-3 9922 bp Feature: gene Location: 39994-41943 bp Feature: domain Description: LTA_synthase Location: 40822-41632 bp Feature: domain Description: LTA_synthase Location: 40822-4163 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG3907 (Membrane-associated enzyme, PAP2 (acid phosphatase) superfamily ), LTA_synthase (cd16015)

Seq: POFR01000051.1 Pseudomonas sp. MPR-R2A7 NODE_51_length_49651_cov_32.4678, whole genome shotgun sequence (49651 bp)
Overview 1 RT 1: 38160-41550 bp Neighborhood of RT #1 [38160, 41550] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 38160-38780 bp Feature: domain Description: DUF1566 Location: 38400-38763 bp Feature: domain Description: DUF1566 Location: 384 00-38763 bp Feature: gene Location: 38835-39191 bp Feature: domain Description: Avd_like Location: 38862-39171 bp Feature: domain Description: Avd_like Location: 38862-39171 bp Feature: gene Location: 39446-40564 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39656-40340 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39656-4 034 0 bp Feature: gene Location: 40608-41165 bp Feature: gene Location: 41176-41550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: POFR01000096.1 Pseudomonas sp. MPR-R2A7 NODE_96_length_25436_cov_26.319, whole genome shotgun sequence (25436 bp)
Overview 1 RT 1: 20162-25326 bp Neighborhood of RT #1 [20162, 25355] ACR3 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 20162-21124 bp Feature: domain Description: ACR3 Location: 20177-21104 bp Feature: domain Description: ACR3 Location: 20177-21104 bp Feature: gene Location: 21163-21297 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21169-21280 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21169-21280 bp Feature: gene Location: 21489-23150 bp Feature: RT Description: RVT_N Location: 21534-21771 bp Feature: RT Description: RVT_N Location: 215 34-21771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21822-22458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21822-2245 8 bp Feature: domain Description: GIIM Note: maturase Location: 22515-22743 bp Feature: domain Description: GIIM Note: maturase Location: 225 15 -22743 bp Feature: gene Location: 23708-25036 bp Feature: domain Description: LZ_Tnp_IS66 Location: 23840-24047 bp Feature: domain Description: LZ_Tnp_IS66 Location: 23840-24047 bp Feature: domain Description: zf-IS66 Location: 24086-24200 bp Feature: domain Description: zf-IS66 Location: 24086-24200 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24242-25016 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24242-25 016 bp Feature: gene Location: 25098-25355 bp Feature: domain Description: TnpB_IS66 Location: 25131-25326 bp Feature: domain Description: TnpB_IS66 Location: 25 131-25 326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACR3 (COG0798), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)