myRT

myRT report for GCA_002882535.1_MPBC4-3

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Seq: POFS01000125.1 Pseudomonas sp. MPBC4-3 NODE_125_length_17585_cov_66.3311, whole genome shotgun sequence (17585 bp)
Overview 1 RT 1: 7897-12336 bp Neighborhood of RT #1 [7897, 12344] RVT-GII GIIM DDE_Tnp_Tn3 SUKH_5 Feature: gene Location: 7897-8109 bp Feature: gene Location: 8262-8432 bp Feature: gene Location: 8582-10003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8939-9554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8939-9554 bp Feature: domain Description: GIIM Note: maturase Location: 9611-9824 bp Feature: domain Description: GIIM Note: maturase Location: 961 1 -9824 bp Feature: gene Location: 10230-11627 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 10386-11562 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1 0386-1 1 562 bp Feature: gene Location: 11937-12344 bp Feature: domain Description: SUKH_5 Location: 11940-12336 bp Feature: domain Description: SUKH_5 Location: 1 1 940-1 2336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526), SUKH_5 (pfam14567)

Seq: POFS01000148.1 Pseudomonas sp. MPBC4-3 NODE_148_length_13666_cov_22.4923, whole genome shotgun sequence (13666 bp)
Overview 1 RT 1: 1270-4556 bp Neighborhood of RT #1 [1270, 4609] RVT-G2L4 xerC Feature: gene Location: 1270-1596 bp Feature: gene Location: 1650-1844 bp Feature: gene Location: 1879-3159 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 2125-2710 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 2 12 5-2 710 bp Feature: gene Location: 3319-3525 bp Feature: gene Location: 3554-4609 bp Feature: domain Description: xerC Location: 3764-4556 bp Feature: domain Description: xerC Location: 3764-4556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4, xerC (PRK01287)

Seq: POFS01000229.1 Pseudomonas sp. MPBC4-3 NODE_229_length_1852_cov_81.8952, whole genome shotgun sequence (1852 bp)
Overview 1 RT 1: 65-1851 bp Neighborhood of RT #1 [65, 1851] RVT-GII GIIM Feature: gene Location: 65-1333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-93 5 bp Feature: domain Description: GIIM Note: maturase Location: 1013-1235 bp Feature: domain Description: GIIM Note: maturase Location: 1013 -123 5 bp Feature: gene Location: 1684-1851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: POFS01000024.1 Pseudomonas sp. MPBC4-3 NODE_24_length_68547_cov_25.7163, whole genome shotgun sequence (68547 bp)
Overview 1 RT 1: 47813-53064 bp Neighborhood of RT #1 [47813, 53084] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C ACR3 Feature: gene Location: 47813-48148 bp Feature: domain Description: TnpB_IS66 Location: 47831-48119 bp Feature: domain Description: TnpB_IS66 Location: 4 7831-4 8119 bp Feature: gene Location: 48210-49538 bp Feature: domain Description: LZ_Tnp_IS66 Location: 48342-48549 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4 834 2-4 854 9 bp Feature: domain Description: zf-IS66 Location: 48588-48702 bp Feature: domain Description: zf-IS66 Location: 4 8588-4 8702 bp Feature: domain Description: DDE_Tnp_IS66 Location: 48744-49518 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4 874 4 -4 9518 bp Feature: gene Location: 50096-51757 bp Feature: domain Description: RVT_N Location: 50141-50384 bp Feature: domain Description: RVT_N Location: 5014 1-50384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50429-51065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504 29-51065 bp Feature: domain Description: GIIM Note: maturase Location: 51122-51350 bp Feature: domain Description: GIIM Note: maturase Location: 51122-51350 bp Feature: gene Location: 51949-52083 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 51955-52066 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 51955-52066 bp Feature: gene Location: 52122-53084 bp Feature: domain Description: ACR3 Location: 52137-53064 bp Feature: domain Description: ACR3 Location: 52137-53064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), ACR3 (COG0798)

Seq: POFS01000064.1 Pseudomonas sp. MPBC4-3 NODE_64_length_37974_cov_25.5247, whole genome shotgun sequence (37974 bp)
Overview 1 RT 1: 15276-20777 bp Neighborhood of RT #1 [15276, 20959] ribD TIGR00244 RVT_N RVT-GII YkfC HNH YbaY Nnt1 Feature: gene Location: 15276-16412 bp Feature: domain Description: ribD Location: 15312-16383 bp Feature: domain Description: ribD Location: 15 312-16383 bp Feature: gene Location: 16409-16912 bp Feature: domain Description: TIGR00244 Location: 16451-16889 bp Feature: domain Description: TIGR00244 Location: 1645 1-16889 bp Feature: gene Location: 16966-18672 bp Feature: domain Description: RVT_N Location: 17023-17260 bp Feature: domain Description: RVT_N Location: 17023-17260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17311-17947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17311-17947 bp Feature: domain Description: YkfC Location: 18079-18250 bp Feature: domain Description: YkfC Location: 18079-1825 0 bp Feature: domain Description: HNH Note: nucleases Location: 18484-18622 bp Feature: domain Description: HNH Note: nucleases Location: 18484-18622 bp Feature: gene Location: 19854-20309 bp Feature: domain Description: YbaY Location: 19875-20304 bp Feature: domain Description: YbaY Location: 19875 -20304 bp Feature: gene Location: 20306-20959 bp Feature: domain Description: Nnt1 Location: 20366-20777 bp Feature: domain Description: Nnt1 Location: 20366-20777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribD (PRK10786), TIGR00244 (transcriptional regulator NrdR), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YbaY (COG3126), Nnt1 (COG3897)