myRT

myRT report for GCA_002882575.1_MPR-R2A4

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Seq: POFT01000017.1 Pseudomonas sp. MPR-R2A4 NODE_17_length_97620_cov_40.7458, whole genome shotgun sequence (97620 bp)
Overview 1 RT 1: 8831-16034 bp Neighborhood of RT #1 [8831, 16054] Porin_O_P RVT-GII GIIM Hydantoinase_B HyuA Feature: gene Location: 8831-10009 bp Feature: domain Description: Porin_O_P Location: 9056-9893 bp Feature: domain Description: Porin_O_P Location: 9056-9893 bp Feature: gene Location: 10190-10669 bp Feature: gene Location: 10674-11882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10866-11481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0866-1 1 481 bp Feature: domain Description: GIIM Note: maturase Location: 11535-11763 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 535-1 1 763 bp Feature: gene Location: 12183-13928 bp Feature: domain Description: Hydantoinase_B Location: 12198-13782 bp Feature: domain Description: Hydantoinase_B Location: 1 21 98-1 3782 bp Feature: gene Location: 13964-16054 bp Feature: domain Description: HyuA Location: 13979-16034 bp Feature: domain Description: HyuA Location: 1 3979-1 6034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Hydantoinase_B (pfam02538), HyuA (COG0145)

Seq: POFT01000021.1 Pseudomonas sp. MPR-R2A4 NODE_21_length_85335_cov_48.546, whole genome shotgun sequence (85335 bp)
Overview 1 RT 1: 16397-21425 bp Neighborhood of RT #1 [16397, 21430] ribD TIGR00244 RVT_N RVT-GII YkfC HNH YbaY Feature: gene Location: 16397-17533 bp Feature: domain Description: ribD Location: 16433-17504 bp Feature: domain Description: ribD Location: 16433-17504 bp Feature: gene Location: 17530-18033 bp Feature: domain Description: TIGR00244 Location: 17572-18010 bp Feature: domain Description: TIGR002 44 Location: 17572 -18010 bp Feature: gene Location: 18087-19793 bp Feature: RT Description: RVT_N Location: 18144-18381 bp Feature: RT Description: RVT_N Location: 18144-18381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18432-19068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18432 -19068 bp Feature: domain Description: YkfC Location: 19200-19371 bp Feature: domain Description: YkfC Location: 192 00-19371 bp Feature: domain Description: HNH Note: nucleases Location: 19605-19743 bp Feature: domain Description: HNH Note: nucleases Location: 19605-19743 bp Feature: gene Location: 19890-20195 bp Feature: gene Location: 20975-21430 bp Feature: domain Description: YbaY Location: 20996-21425 bp Feature: domain Description: YbaY Location: 2 0996-2 142 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribD (PRK10786), TIGR00244 (transcriptional regulator NrdR), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YbaY (COG3126)

Seq: POFT01000035.1 Pseudomonas sp. MPR-R2A4 NODE_35_length_68044_cov_46.0575, whole genome shotgun sequence (68044 bp)
Overview 1 RT 1: 16218-23841 bp Neighborhood of RT #1 [16218, 23846] LTA_synthase COG3907 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 16218-18167 bp Feature: domain Description: LTA_synthase Location: 17046-17856 bp Feature: domain Description: LTA_synthase Location: 17046-17856 bp Feature: gene Location: 18216-18953 bp Feature: domain Description: COG3907 Location: 18234-18930 bp Feature: domain Description: COG3 907 Location: 1823 4-1893 0 bp Feature: gene Location: 19127-20818 bp Feature: RT Description: RVT_N Location: 19181-19421 bp Feature: RT Description: RVT_N Location: 19181-19421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19469-20114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19469-20114 bp Feature: domain Description: GIIM Note: maturase Location: 20165-20399 bp Feature: domain Description: GIIM Note: maturase Location: 20165-203 99 bp Feature: domain Description: HNHc Note: nucleases Location: 20618-20771 bp Feature: domain Description: HNHc Note: nucleases Location: 20618-20771 bp Feature: gene Location: 21853-23499 bp Feature: domain Description: groEL Location: 21859-23482 bp Feature: domain Description: groEL Location: 21859-23 482 bp Feature: gene Location: 23550-23846 bp Feature: domain Description: groES Location: 23559-23841 bp Feature: domain Description: groES Location: 23 559-23 841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LTA_synthase (cd16015), COG3907 (Membrane-associated enzyme, PAP2 (acid phosphatase) superfamily ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: POFT01000059.1 Pseudomonas sp. MPR-R2A4 NODE_59_length_49692_cov_44.9158, whole genome shotgun sequence (49692 bp)
Overview 1 RT 1: 8143-11516 bp Neighborhood of RT #1 [8143, 11533] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 8143-8517 bp Feature: gene Location: 8528-9085 bp Feature: gene Location: 9129-10247 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9339-10023 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9339-10023 bp Feature: gene Location: 10502-10858 bp Feature: domain Description: Avd_like Location: 10529-10838 bp Feature: domain Description: Avd_like Location: 10529-10838 bp Feature: gene Location: 10913-11533 bp Feature: domain Description: DUF1566 Location: 11153-11516 bp Feature: domain Description: DUF1566 Location: 11153-11516 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs

Seq: POFT01000094.1 Pseudomonas sp. MPR-R2A4 NODE_94_length_25426_cov_37.5385, whole genome shotgun sequence (25426 bp)
Overview 1 RT 1: 20152-25316 bp Neighborhood of RT #1 [20152, 25345] ACR3 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 20152-21114 bp Feature: domain Description: ACR3 Location: 20167-21094 bp Feature: domain Description: ACR3 Location: 20167-21094 bp Feature: gene Location: 21153-21287 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21159-21270 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2115 9-21270 bp Feature: gene Location: 21479-23140 bp Feature: RT Description: RVT_N Location: 21524-21767 bp Feature: RT Description: RVT_N Location: 215 24-21767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21812-22448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21812-22448 bp Feature: domain Description: GIIM Note: maturase Location: 22505-22733 bp Feature: domain Description: GIIM Note: maturase Location: 225 05 -22733 bp Feature: gene Location: 23698-25026 bp Feature: domain Description: LZ_Tnp_IS66 Location: 23830-24037 bp Feature: domain Description: LZ_Tnp_IS66 Location: 23830-24037 bp Feature: domain Description: zf-IS66 Location: 24076-24190 bp Feature: domain Description: zf-IS66 Location: 24076-24190 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24232-25006 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24232-25 006 bp Feature: gene Location: 25088-25345 bp Feature: domain Description: TnpB_IS66 Location: 25121-25316 bp Feature: domain Description: TnpB_IS66 Location: 25 121-25 316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACR3 (COG0798), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: POFT01000096.1 Pseudomonas sp. MPR-R2A4 NODE_96_length_24376_cov_46.5158, whole genome shotgun sequence (24376 bp)
Overview 1 RT 1: 15364-20595 bp Neighborhood of RT #1 [15364, 20678] PRK10431 PRK10319 IS5 RVT-GII GIIM IS5 ABC_phnC Feature: gene Location: 15364-16428 bp Feature: domain Description: PRK10431 Location: 15430-15796 bp Feature: domain Description: PRK10431 Location: 15430-15796 bp Feature: domain Description: PRK10319 Location: 15826-16414 bp Feature: domain Description: PRK10319 Location: 15826 -16 414 bp Feature: gene Location: 16559-17017 bp Feature: domain Description: IS5 Location: 16562-16991 bp Feature: domain Description: IS5 Location: 16 56 2-16 991 bp Feature: gene Location: 17089-18357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17302-17959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17302-17959 bp Feature: domain Description: GIIM Note: maturase Location: 18037-18259 bp Feature: domain Description: GIIM Note: maturase Location: 18037-18259 bp Feature: gene Location: 18850-19389 bp Feature: domain Description: IS5 Location: 19039-19366 bp Feature: domain Description: IS5 Location: 19039-1936 6 bp Feature: gene Location: 19851-20678 bp Feature: domain Description: ABC_phnC Location: 19881-20595 bp Feature: domain Description: ABC_phnC Location: 19881-20595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10431 (N-acetylmuramoyl-l-alanine amidase II; Provisional), PRK10319 (N-acetylmuramoyl-L-alanine amidase AmiA), IS5 (COG3039), RVT-GII, GIIM (pfam08388), ABC_phnC (TIGR02315)