myRT

myRT report for GCA_002882595.1_GW460-12

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Seq: POFU01000152.1 Pseudomonas sp. GW460-12 NODE_152_length_12739_cov_22.361, whole genome shotgun sequence (12739 bp)
Overview 1 RT 1: 7465-12629 bp Neighborhood of RT #1 [7465, 12658] ACR3 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 7465-8427 bp Feature: domain Description: ACR3 Location: 7480-8407 bp Feature: domain Description: ACR3 Location: 7480-8407 bp Feature: gene Location: 8466-8600 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8472-8583 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8472-8583 bp Feature: gene Location: 8792-10453 bp Feature: RT Description: RVT_N Location: 8837-9080 bp Feature: RT Description: RVT_N Location: 8837-9080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9125-9761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 25-9761 bp Feature: domain Description: GIIM Note: maturase Location: 9818-10046 bp Feature: domain Description: GIIM Note: maturase Location: 981 8-1 0046 bp Feature: gene Location: 11011-12339 bp Feature: domain Description: LZ_Tnp_IS66 Location: 11143-11350 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 1 1 43-1 1 350 bp Feature: domain Description: zf-IS66 Location: 11389-11503 bp Feature: domain Description: zf-IS66 Location: 1 1 389-1 1 503 bp Feature: domain Description: DDE_Tnp_IS66 Location: 11545-12319 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 1 545-1 231 9 bp Feature: gene Location: 12401-12658 bp Feature: domain Description: TnpB_IS66 Location: 12434-12629 bp Feature: domain Description: TnpB_IS66 Location: 1 2434-1 2629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), ACR3 (COG0798), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: POFU01000001.1 Pseudomonas sp. GW460-12 NODE_1_length_291990_cov_21.9824, whole genome shotgun sequence (291990 bp)
Overview 1 RT 1: 198706-205909 bp Neighborhood of RT #1 [198706, 205929] Porin_O_P RVT-GII GIIM Hydantoinase_B HyuA Feature: gene Location: 198706-199884 bp Feature: domain Description: Porin_O_P Location: 198931-199768 bp Feature: domain Description: Porin_O_P Location: 198931-199768 bp Feature: gene Location: 200065-200544 bp Feature: gene Location: 200549-201757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 200741-201356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 00741-2 01356 bp Feature: domain Description: GIIM Note: maturase Location: 201410-201638 bp Feature: domain Description: GIIM Note: maturase Location: 2 01410-2 01638 bp Feature: gene Location: 202058-203803 bp Feature: domain Description: Hydantoinase_B Location: 202073-203657 bp Feature: domain Description: Hydantoinase_B Location: 2 02 073-2 03657 bp Feature: gene Location: 203839-205929 bp Feature: domain Description: HyuA Location: 203854-205909 bp Feature: domain Description: HyuA Location: 2 03854-2 05909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Porin_O_P (pfam07396), RVT-GII, GIIM (pfam08388), Hydantoinase_B (pfam02538), HyuA (COG0145)

Seq: POFU01000047.1 Pseudomonas sp. GW460-12 NODE_47_length_49630_cov_25.7345, whole genome shotgun sequence (49630 bp)
Overview 1 RT 1: 8081-11454 bp Neighborhood of RT #1 [8081, 11471] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 8081-8455 bp Feature: gene Location: 8466-9023 bp Feature: gene Location: 9067-10185 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9277-9961 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9277-9961 bp Feature: gene Location: 10440-10796 bp Feature: domain Description: Avd_like Location: 10467-10776 bp Feature: domain Description: Avd_like Location: 10467-10776 bp Feature: gene Location: 10851-11471 bp Feature: domain Description: DUF1566 Location: 11091-11454 bp Feature: domain Description: DUF1566 Location: 11091-11454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs

Seq: POFU01000078.1 Pseudomonas sp. GW460-12 NODE_78_length_31614_cov_24.4987, whole genome shotgun sequence (31614 bp)
Overview 1 RT 1: 7769-15086 bp Neighborhood of RT #1 [7769, 15397] groES groEL RVT_N RVT-GII GIIM HNHc COG3907 LTA_synthase Feature: gene Location: 7769-8065 bp Feature: domain Description: groES Location: 7778-8060 bp Feature: domain Description: groES Location: 7778-8060 bp Feature: gene Location: 8116-9762 bp Feature: domain Description: groEL Location: 8122-9745 bp Feature: domain Description: groEL Location: 8122-974 5 bp Feature: gene Location: 10797-12488 bp Feature: RT Description: RVT_N Location: 10851-11091 bp Feature: RT Description: RVT_N Location: 10851-11091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11139-11784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11139-11784 bp Feature: domain Description: GIIM Note: maturase Location: 11835-12069 bp Feature: domain Description: GIIM Note: maturase Location: 11835-12069 bp Feature: domain Description: HNHc Note: nucleases Location: 12288-12441 bp Feature: domain Description: HNHc Note: nucleases Location: 12288-124 4 1 bp Feature: gene Location: 12662-13399 bp Feature: domain Description: COG3907 Location: 12680-13376 bp Feature: domain Description: COG3907 Location: 12680-13376 bp Feature: gene Location: 13448-15397 bp Feature: domain Description: LTA_synthase Location: 14276-15086 bp Feature: domain Description: LTA_synthase Location: 14 276-15086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG3907 (Membrane-associated enzyme, PAP2 (acid phosphatase) superfamily ), LTA_synthase (cd16015), groES (PRK14533), groEL (PRK12852)

Seq: POFU01000099.1 Pseudomonas sp. GW460-12 NODE_99_length_24376_cov_27.2097, whole genome shotgun sequence (24376 bp)
Overview 1 RT 1: 15364-20595 bp Neighborhood of RT #1 [15364, 20678] PRK10431 PRK10319 IS5 RVT-GII GIIM IS5 ABC_phnC Feature: gene Location: 15364-16428 bp Feature: domain Description: PRK10431 Location: 15430-15796 bp Feature: domain Description: PRK10431 Location: 15 430-15 796 bp Feature: domain Description: PRK10319 Location: 15826-16414 bp Feature: domain Description: PRK10319 Location: 15 826-16414 bp Feature: gene Location: 16559-17017 bp Feature: domain Description: IS5 Location: 16562-16991 bp Feature: domain Description: IS5 Location: 165 62-16991 bp Feature: gene Location: 17089-18357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17302-17959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17302-1795 9 bp Feature: domain Description: GIIM Note: maturase Location: 18037-18259 bp Feature: domain Description: GIIM Note: maturase Location: 18037-1825 9 bp Feature: gene Location: 18850-19389 bp Feature: domain Description: IS5 Location: 19039-19366 bp Feature: domain Description: IS5 Location: 19039-19366 bp Feature: gene Location: 19851-20678 bp Feature: domain Description: ABC_phnC Location: 19881-20595 bp Feature: domain Description: ABC_phnC Location: 19881-205 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10431 (N-acetylmuramoyl-l-alanine amidase II; Provisional), PRK10319 (N-acetylmuramoyl-L-alanine amidase AmiA), IS5 (COG3039), RVT-GII, GIIM (pfam08388), ABC_phnC (TIGR02315)