myRT

myRT report for GCA_002882605.1_FW301-21B01

Download annotations/find similar RTs

Seq: POFX01000121.1 Pseudomonas sp. FW301-21B01 NODE_121_length_17585_cov_60.5663, whole genome shotgun sequence (17585 bp)
Overview 1 RT 1: 7897-12336 bp Neighborhood of RT #1 [7897, 12344] RVT-GII GIIM DDE_Tnp_Tn3 SUKH_5 Feature: gene Location: 7897-8109 bp Feature: gene Location: 8262-8432 bp Feature: gene Location: 8582-10003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8939-9554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8939-9554 bp Feature: domain Description: GIIM Note: maturase Location: 9611-9824 bp Feature: domain Description: GIIM Note: maturase Location: 961 1 -9824 bp Feature: gene Location: 10230-11627 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 10386-11562 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1 0386-1 1 562 bp Feature: gene Location: 11937-12344 bp Feature: domain Description: SUKH_5 Location: 11940-12336 bp Feature: domain Description: SUKH_5 Location: 1 1 940-1 2336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526), SUKH_5 (pfam14567)

Seq: POFX01000136.1 Pseudomonas sp. FW301-21B01 NODE_136_length_13666_cov_22.9911, whole genome shotgun sequence (13666 bp)
Overview 1 RT 1: 1270-4556 bp Neighborhood of RT #1 [1270, 4609] RVT-G2L4 xerC Feature: gene Location: 1270-1596 bp Feature: gene Location: 1650-1844 bp Feature: gene Location: 1879-3159 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 2125-2710 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 2 12 5-2 710 bp Feature: gene Location: 3319-3525 bp Feature: gene Location: 3554-4609 bp Feature: domain Description: xerC Location: 3764-4556 bp Feature: domain Description: xerC Location: 3764-4556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4, xerC (PRK01287)

Seq: POFX01000218.1 Pseudomonas sp. FW301-21B01 NODE_218_length_1852_cov_107.824, whole genome shotgun sequence (1852 bp)
Overview 1 RT 1: 65-1851 bp Neighborhood of RT #1 [65, 1851] RVT-GII GIIM Feature: gene Location: 65-1333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-93 5 bp Feature: domain Description: GIIM Note: maturase Location: 1013-1235 bp Feature: domain Description: GIIM Note: maturase Location: 1013 -123 5 bp Feature: gene Location: 1684-1851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: POFX01000030.1 Pseudomonas sp. FW301-21B01 NODE_30_length_68914_cov_32.4913, whole genome shotgun sequence (68914 bp)
Overview 1 RT 1: 15831-21073 bp Neighborhood of RT #1 [15831, 21102] ACR3 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 15831-16793 bp Feature: domain Description: ACR3 Location: 15846-16773 bp Feature: domain Description: ACR3 Location: 1584 6-16773 bp Feature: gene Location: 16832-16966 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 16838-16949 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 16838-1694 9 bp Feature: gene Location: 17158-18819 bp Feature: domain Description: RVT_N Location: 17203-17446 bp Feature: domain Description: RVT_N Location: 17203-174 4 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17491-18127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174 91-18127 bp Feature: domain Description: GIIM Note: maturase Location: 18184-18412 bp Feature: domain Description: GIIM Note: maturase Location: 18184 -184 12 bp Feature: gene Location: 19377-20705 bp Feature: domain Description: LZ_Tnp_IS66 Location: 19509-19716 bp Feature: domain Description: LZ_Tnp_IS66 Location: 19509-19716 bp Feature: domain Description: zf-IS66 Location: 19755-19869 bp Feature: domain Description: zf-IS66 Location: 19755-19869 bp Feature: domain Description: DDE_Tnp_IS66 Location: 19911-20685 bp Feature: domain Description: DDE_Tnp_IS66 Location: 19911-20685 bp Feature: gene Location: 20767-21102 bp Feature: domain Description: TnpB_IS66 Location: 20785-21073 bp Feature: domain Description: TnpB_IS66 Location: 20785-21073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACR3 (COG0798), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: POFX01000052.1 Pseudomonas sp. FW301-21B01 NODE_52_length_43679_cov_37.898, whole genome shotgun sequence (43679 bp)
Overview 1 RT 1: 15228-20729 bp Neighborhood of RT #1 [15228, 20911] ribD TIGR00244 RVT_N RVT-GII YkfC HNH YbaY Nnt1 Feature: gene Location: 15228-16364 bp Feature: domain Description: ribD Location: 15264-16335 bp Feature: domain Description: ribD Location: 15 264-16335 bp Feature: gene Location: 16361-16864 bp Feature: domain Description: TIGR00244 Location: 16403-16841 bp Feature: domain Description: TIGR00244 Location: 16403-16841 bp Feature: gene Location: 16918-18624 bp Feature: domain Description: RVT_N Location: 16975-17212 bp Feature: domain Description: RVT_N Location: 16975 -17212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17263-17899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17263-17899 bp Feature: domain Description: YkfC Location: 18031-18202 bp Feature: domain Description: YkfC Location: 18031-18202 bp Feature: domain Description: HNH Note: nucleases Location: 18436-18574 bp Feature: domain Description: HNH Note: nucleases Location: 18436-185 74 bp Feature: gene Location: 19806-20261 bp Feature: domain Description: YbaY Location: 19827-20256 bp Feature: domain Description: YbaY Location: 19827-2025 6 bp Feature: gene Location: 20258-20911 bp Feature: domain Description: Nnt1 Location: 20318-20729 bp Feature: domain Description: Nnt1 Location: 20318-20729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribD (PRK10786), TIGR00244 (transcriptional regulator NrdR), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YbaY (COG3126), Nnt1 (COG3897)