myRT

myRT report for GCA_002882635.1_MPR-R2A6

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Seq: POGA01000101.1 Pseudomonas sp. MPR-R2A6 NODE_101_length_25428_cov_30.0272, whole genome shotgun sequence (25428 bp)
Overview 1 RT 1: 82-5255 bp Neighborhood of RT #1 [82, 5275] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C ACR3 Feature: gene Location: 82-339 bp Feature: domain Description: TnpB_IS66 Location: 115-310 bp Feature: domain Description: TnpB_IS66 Location: 1 1 5-31 0 bp Feature: gene Location: 401-1729 bp Feature: domain Description: LZ_Tnp_IS66 Location: 533-740 bp Feature: domain Description: LZ_Tnp_IS66 Location: 533-740 bp Feature: domain Description: zf-IS66 Location: 779-893 bp Feature: domain Description: zf-IS66 Location: 779-893 bp Feature: domain Description: DDE_Tnp_IS66 Location: 935-1709 bp Feature: domain Description: DDE_Tnp_IS66 Location: 935-1 709 bp Feature: gene Location: 2287-3948 bp Feature: RT Description: RVT_N Location: 2332-2575 bp Feature: RT Description: RVT_N Location: 2332-2575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620-3256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620-3256 bp Feature: domain Description: GIIM Note: maturase Location: 3313-3541 bp Feature: domain Description: GIIM Note: maturase Location: 331 3-3541 bp Feature: gene Location: 4140-4274 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4146-4257 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 41 46-4257 bp Feature: gene Location: 4313-5275 bp Feature: domain Description: ACR3 Location: 4328-5255 bp Feature: domain Description: ACR3 Location: 4328-5255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), ACR3 (COG0798), TnpB_IS66 (pfam05717)

Seq: POGA01000104.1 Pseudomonas sp. MPR-R2A6 NODE_104_length_24376_cov_38.4809, whole genome shotgun sequence (24376 bp)
Overview 1 RT 1: 15364-20595 bp Neighborhood of RT #1 [15364, 20678] PRK10431 PRK10319 IS5 RVT-GII GIIM IS5 ABC_phnC Feature: gene Location: 15364-16428 bp Feature: domain Description: PRK10431 Location: 15430-15796 bp Feature: domain Description: PRK10431 Location: 15430-15796 bp Feature: domain Description: PRK10319 Location: 15826-16414 bp Feature: domain Description: PRK10319 Location: 1582 6-16414 bp Feature: gene Location: 16559-17017 bp Feature: domain Description: IS5 Location: 16562-16991 bp Feature: domain Description: IS5 Location: 16562 -16991 bp Feature: gene Location: 17089-18357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17302-17959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17302 -17959 bp Feature: domain Description: GIIM Note: maturase Location: 18037-18259 bp Feature: domain Description: GIIM Note: maturase Location: 18037-182 59 bp Feature: gene Location: 18850-19389 bp Feature: domain Description: IS5 Location: 19039-19366 bp Feature: domain Description: IS5 Location: 19039-19366 bp Feature: gene Location: 19851-20678 bp Feature: domain Description: ABC_phnC Location: 19881-20595 bp Feature: domain Description: ABC_phnC Location: 19881-2 0595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10431 (N-acetylmuramoyl-l-alanine amidase II; Provisional), PRK10319 (N-acetylmuramoyl-L-alanine amidase AmiA), IS5 (COG3039), RVT-GII, GIIM (pfam08388), ABC_phnC (TIGR02315)

Seq: POGA01000001.1 Pseudomonas sp. MPR-R2A6 NODE_1_length_291981_cov_30.7185, whole genome shotgun sequence (291981 bp)
Overview 1 RT 1: 198693-205896 bp Neighborhood of RT #1 [198693, 205916] Porin_O_P RVT-GII GIIM Hydantoinase_B HyuA Feature: gene Location: 198693-199871 bp Feature: domain Description: Porin_O_P Location: 198918-199755 bp Feature: domain Description: Porin_O_P Location: 198918-199755 bp Feature: gene Location: 200052-200531 bp Feature: gene Location: 200536-201744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 200728-201343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 200728-2013 43 bp Feature: domain Description: GIIM Note: maturase Location: 201397-201625 bp Feature: domain Description: GIIM Note: maturase Location: 2013 97-201625 bp Feature: gene Location: 202045-203790 bp Feature: domain Description: Hydantoinase_B Location: 202060-203644 bp Feature: domain Description: Hydantoinase_B Location: 202060-203 644 bp Feature: gene Location: 203826-205916 bp Feature: domain Description: HyuA Location: 203841-205896 bp Feature: domain Description: HyuA Location: 203 841-205896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Porin_O_P (pfam07396), RVT-GII, GIIM (pfam08388), Hydantoinase_B (pfam02538), HyuA (COG0145)

Seq: POGA01000032.1 Pseudomonas sp. MPR-R2A6 NODE_32_length_68044_cov_37.0709, whole genome shotgun sequence (68044 bp)
Overview 1 RT 1: 16218-23841 bp Neighborhood of RT #1 [16218, 23846] LTA_synthase COG3907 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 16218-18167 bp Feature: domain Description: LTA_synthase Location: 17046-17856 bp Feature: domain Description: LTA_synthase Location: 1704 6-17856 bp Feature: gene Location: 18216-18953 bp Feature: domain Description: COG3907 Location: 18234-18930 bp Feature: domain Description: COG3907 Location: 18234 -18930 bp Feature: gene Location: 19127-20818 bp Feature: RT Description: RVT_N Location: 19181-19421 bp Feature: RT Description: RVT_N Location: 19181-194 21 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19469-20114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194 69-20114 bp Feature: domain Description: GIIM Note: maturase Location: 20165-20399 bp Feature: domain Description: GIIM Note: maturase Location: 20165-20399 bp Feature: domain Description: HNHc Note: nucleases Location: 20618-20771 bp Feature: domain Description: HNHc Note: nucleases Location: 20618-20771 bp Feature: gene Location: 21853-23499 bp Feature: domain Description: groEL Location: 21859-23482 bp Feature: domain Description: groEL Location: 21859-234 82 bp Feature: gene Location: 23550-23846 bp Feature: domain Description: groES Location: 23559-23841 bp Feature: domain Description: groES Location: 23559-2384 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LTA_synthase (cd16015), COG3907 (Membrane-associated enzyme, PAP2 (acid phosphatase) superfamily ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: POGA01000055.1 Pseudomonas sp. MPR-R2A6 NODE_55_length_49624_cov_36.7159, whole genome shotgun sequence (49624 bp)
Overview 1 RT 1: 8075-11448 bp Neighborhood of RT #1 [8075, 11465] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 8075-8449 bp Feature: gene Location: 8460-9017 bp Feature: gene Location: 9061-10179 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9271-9955 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9271-995 5 bp Feature: gene Location: 10434-10790 bp Feature: domain Description: Avd_like Location: 10461-10770 bp Feature: domain Description: Avd_like Location: 10461-10770 bp Feature: gene Location: 10845-11465 bp Feature: domain Description: DUF1566 Location: 11085-11448 bp Feature: domain Description: DUF15 66 Location: 11085 -11448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs