myRT

myRT report for GCA_002882675.1_GW456-A1B

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Seq: PODK01000003.1 Pseudomonas sp. GW456-A1B NODE_3_length_232222_cov_25.678, whole genome shotgun sequence (232222 bp)
Overview 1 RT 1: 179559-183382 bp Neighborhood of RT #1 [179559, 183405] PcbC GDH_like_2 RVT-GII YccA_like Lrp Feature: gene Location: 179559-180539 bp Feature: domain Description: PcbC Location: 179610-180513 bp Feature: domain Description: PcbC Location: 1 7961 0-1 8051 3 bp Feature: gene Location: 180550-181476 bp Feature: domain Description: GDH_like_2 Location: 180553-181465 bp Feature: domain Description: GDH_like_2 Location: 1 80553-1 81 465 bp Feature: gene Location: 181532-181702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181544-181634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 544-1 81 634 bp Feature: gene Location: 182231-182902 bp Feature: domain Description: YccA_like Location: 182285-182891 bp Feature: domain Description: YccA_like Location: 1 82285-1 82891 bp Feature: gene Location: 182968-183405 bp Feature: domain Description: Lrp Location: 182974-183382 bp Feature: domain Description: Lrp Location: 1 82974-1 83382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PcbC (COG3491), GDH_like_2 (cd12164), RVT-GII, YccA_like (cd10433), Lrp (COG1522)

Seq: PODK01000088.1 Pseudomonas sp. GW456-A1B NODE_88_length_10966_cov_21.5567, whole genome shotgun sequence (10966 bp)
Overview 1 RT 1: 3775-10964 bp Neighborhood of RT #1 [3775, 10964] GIIM RVT-GII RVT_N DDE_Tnp_IS66 LZ_Tnp_IS66 zf-IS66 TnpB_IS66 RVT-GII InsE Feature: gene Location: 3775-4080 bp Feature: gene Location: 4093-4389 bp Feature: domain Description: GIIM Note: maturase Location: 4102-4300 bp Feature: domain Description: GIIM Note: maturase Location: 4102 -4300 bp Feature: gene Location: 4506-4928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4512-4911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4512 -4911 bp Feature: gene Location: 5087-5437 bp Feature: RT Description: RVT_N Location: 5132-5375 bp Feature: RT Description: RVT_N Location: 5132 -5375 bp Feature: gene Location: 5994-6755 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5997-6735 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5997-6735 bp Feature: gene Location: 6840-7322 bp Feature: domain Description: LZ_Tnp_IS66 Location: 6975-7179 bp Feature: domain Description: LZ_Tnp_IS66 Location: 6975-7179 bp Feature: domain Description: zf-IS66 Location: 7206-7320 bp Feature: domain Description: zf-IS66 Location: 72 06-732 0 bp Feature: gene Location: 7496-7741 bp Feature: domain Description: TnpB_IS66 Location: 7517-7724 bp Feature: domain Description: TnpB_IS66 Location: 7517-772 4 bp Feature: gene Location: 8257-10023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8941-9631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8941-9631 bp Feature: gene Location: 10071-10247 bp Feature: domain Description: InsE Location: 10074-10233 bp Feature: domain Description: InsE Location: 10074-102 33 bp Feature: gene Location: 10464-10964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, RVT_N (pfam13655), DDE_Tnp_IS66 (pfam03050), InsE (COG2963), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), TnpB_IS66 (pfam05717)