myRT

myRT report for GCA_002882695.1_FW507-29LB

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Seq: PODI01000003.1 Pseudomonas sp. FW507-29LB NODE_3_length_233044_cov_28.524, whole genome shotgun sequence (233044 bp)
Overview 1 RT 1: 126208-130031 bp Neighborhood of RT #1 [126208, 130054] PcbC GDH_like_2 RVT-GII YccA_like Lrp Feature: gene Location: 126208-127188 bp Feature: domain Description: PcbC Location: 126259-127162 bp Feature: domain Description: PcbC Location: 1 26259-1 271 62 bp Feature: gene Location: 127199-128125 bp Feature: domain Description: GDH_like_2 Location: 127202-128114 bp Feature: domain Description: GDH_like_2 Location: 1 27202-1 281 1 4 bp Feature: gene Location: 128181-128351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128193-128283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 281 93-1 28283 bp Feature: gene Location: 128880-129551 bp Feature: domain Description: YccA_like Location: 128934-129540 bp Feature: domain Description: YccA_like Location: 1 28934-1 29540 bp Feature: gene Location: 129617-130054 bp Feature: domain Description: Lrp Location: 129623-130031 bp Feature: domain Description: Lrp Location: 1 29623-1 30031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PcbC (COG3491), GDH_like_2 (cd12164), RVT-GII, YccA_like (cd10433), Lrp (COG1522)

Seq: PODI01000077.1 Pseudomonas sp. FW507-29LB NODE_77_length_10972_cov_24.5998, whole genome shotgun sequence (10972 bp)
Overview 1 RT 1: 3-7195 bp Neighborhood of RT #1 [3, 7195] InsE RVT-GII TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM Feature: gene Location: 3-500 bp Feature: gene Location: 723-899 bp Feature: domain Description: InsE Location: 726-885 bp Feature: domain Description: InsE Location: 72 6-885 bp Feature: gene Location: 947-2713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1631-2321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1631-2 32 1 bp Feature: gene Location: 2992-3474 bp Feature: domain Description: TnpB_IS66 Location: 3250-3457 bp Feature: domain Description: TnpB_IS66 Location: 32 50-3457 bp Feature: gene Location: 3648-4130 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3783-3987 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3783-3987 bp Feature: domain Description: zf-IS66 Location: 4014-4128 bp Feature: domain Description: zf-IS66 Location: 4014-412 8 bp Feature: gene Location: 4215-4976 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4218-4956 bp Feature: domain Description: DDE_Tnp_IS66 Location: 42 18-4956 bp Feature: gene Location: 5533-5883 bp Feature: RT Description: RVT_N Location: 5578-5815 bp Feature: RT Description: RVT_N Location: 5578-5815 bp Feature: gene Location: 6072-6464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6078-6447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6078-6447 bp Feature: gene Location: 6581-6877 bp Feature: domain Description: GIIM Note: maturase Location: 6590-6788 bp Feature: domain Description: GIIM Note: maturase Location: 6590-6788 bp Feature: gene Location: 6974-7195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), InsE (COG2963), RVT-GII, DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), GIIM (pfam08388)