myRT

myRT report for GCA_002882735.1_GP01-A5

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Seq: PODO01000028.1 Pseudomonas sp. GP01-A5 NODE_28_length_73678_cov_29.9348, whole genome shotgun sequence (73678 bp)
Overview 1 RT 1: 48225-53476 bp Neighborhood of RT #1 [48225, 53496] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C ACR3 Feature: gene Location: 48225-48560 bp Feature: domain Description: TnpB_IS66 Location: 48243-48531 bp Feature: domain Description: TnpB_IS66 Location: 48243-48531 bp Feature: gene Location: 48622-49950 bp Feature: domain Description: LZ_Tnp_IS66 Location: 48754-48961 bp Feature: domain Description: LZ_Tnp_IS66 Location: 48754-48961 bp Feature: domain Description: zf-IS66 Location: 49000-49114 bp Feature: domain Description: zf-IS66 Location: 49000-491 1 4 bp Feature: domain Description: DDE_Tnp_IS66 Location: 49156-49930 bp Feature: domain Description: DDE_Tnp_IS66 Location: 491 56-49930 bp Feature: gene Location: 50508-52169 bp Feature: RT Description: RVT_N Location: 50553-50796 bp Feature: RT Description: RVT_N Location: 50553-50796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50841-51477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50841 -51 477 bp Feature: domain Description: GIIM Note: maturase Location: 51534-51762 bp Feature: domain Description: GIIM Note: maturase Location: 51 534-51 762 bp Feature: gene Location: 52361-52495 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 52367-52478 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 52367-52478 bp Feature: gene Location: 52534-53496 bp Feature: domain Description: ACR3 Location: 52549-53476 bp Feature: domain Description: ACR3 Location: 52549-53476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), ACR3 (COG0798)