myRT

myRT report for GCA_002882775.1_GP01-A1

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Seq: PODV01000013.1 Pseudomonas sp. GP01-A1 NODE_13_length_105090_cov_34.7271, whole genome shotgun sequence (105090 bp)
Overview 1 RT 1: 20161-25403 bp Neighborhood of RT #1 [20161, 25432] ACR3 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 20161-21123 bp Feature: domain Description: ACR3 Location: 20176-21103 bp Feature: domain Description: ACR3 Location: 201 76-21 1 03 bp Feature: gene Location: 21162-21296 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21168-21279 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 68-21 279 bp Feature: gene Location: 21488-23149 bp Feature: RT Description: RVT_N Location: 21533-21776 bp Feature: RT Description: RVT_N Location: 21 533-21 776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21821-22457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 821 -22457 bp Feature: domain Description: GIIM Note: maturase Location: 22514-22742 bp Feature: domain Description: GIIM Note: maturase Location: 2251 4-22742 bp Feature: gene Location: 23707-25035 bp Feature: domain Description: LZ_Tnp_IS66 Location: 23839-24046 bp Feature: domain Description: LZ_Tnp_IS66 Location: 23839-24046 bp Feature: domain Description: zf-IS66 Location: 24085-24199 bp Feature: domain Description: zf-IS66 Location: 24085-241 99 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24241-25015 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24241 -2501 5 bp Feature: gene Location: 25097-25432 bp Feature: domain Description: TnpB_IS66 Location: 25115-25403 bp Feature: domain Description: TnpB_IS66 Location: 251 1 5-25403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACR3 (COG0798), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)