myRT

myRT report for GCA_002883285.1_MPR-R2A5

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Seq: POFV01000003.1 Pseudomonas sp. MPR-R2A5 NODE_3_length_176537_cov_28.7434, whole genome shotgun sequence (176537 bp)
Overview 1 RT 1: 143809-151012 bp Neighborhood of RT #1 [143809, 151032] Porin_O_P RVT-GII GIIM Hydantoinase_B HyuA Feature: gene Location: 143809-144987 bp Feature: domain Description: Porin_O_P Location: 144034-144871 bp Feature: domain Description: Porin_O_P Location: 1 44034-1 44871 bp Feature: gene Location: 145168-145647 bp Feature: gene Location: 145652-146860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145844-146459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 45844-1 46459 bp Feature: domain Description: GIIM Note: maturase Location: 146513-146741 bp Feature: domain Description: GIIM Note: maturase Location: 1 4651 3-1 46741 bp Feature: gene Location: 147161-148906 bp Feature: domain Description: Hydantoinase_B Location: 147176-148760 bp Feature: domain Description: Hydantoinase_B Location: 1 471 76-1 48760 bp Feature: gene Location: 148942-151032 bp Feature: domain Description: HyuA Location: 148957-151012 bp Feature: domain Description: HyuA Location: 1 48957-1 51 01 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Porin_O_P (pfam07396), RVT-GII, GIIM (pfam08388), Hydantoinase_B (pfam02538), HyuA (COG0145)

Seq: POFV01000056.1 Pseudomonas sp. MPR-R2A5 NODE_56_length_49664_cov_36.6803, whole genome shotgun sequence (49664 bp)
Overview 1 RT 1: 8115-11488 bp Neighborhood of RT #1 [8115, 11505] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 8115-8489 bp Feature: gene Location: 8500-9057 bp Feature: gene Location: 9101-10219 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9311-9995 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9311-9995 bp Feature: gene Location: 10474-10830 bp Feature: domain Description: Avd_like Location: 10501-10810 bp Feature: domain Description: Avd_like Location: 10501-10810 bp Feature: gene Location: 10885-11505 bp Feature: domain Description: DUF1566 Location: 11125-11488 bp Feature: domain Description: DUF1566 Location: 1112 5-11488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs

Seq: POFV01000066.1 Pseudomonas sp. MPR-R2A5 NODE_66_length_37411_cov_35.3698, whole genome shotgun sequence (37411 bp)
Overview 1 RT 1: 13566-20883 bp Neighborhood of RT #1 [13566, 21194] groES groEL RVT_N RVT-GII GIIM HNHc COG3907 LTA_synthase Feature: gene Location: 13566-13862 bp Feature: domain Description: groES Location: 13575-13857 bp Feature: domain Description: groES Location: 13 575-13 857 bp Feature: gene Location: 13913-15559 bp Feature: domain Description: groEL Location: 13919-15542 bp Feature: domain Description: groEL Location: 13 919-15542 bp Feature: gene Location: 16594-18285 bp Feature: RT Description: RVT_N Location: 16648-16888 bp Feature: RT Description: RVT_N Location: 16648-16888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16936-17581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1693 6-17581 bp Feature: domain Description: GIIM Note: maturase Location: 17632-17866 bp Feature: domain Description: GIIM Note: maturase Location: 1763 2-17866 bp Feature: domain Description: HNHc Note: nucleases Location: 18085-18238 bp Feature: domain Description: HNHc Note: nucleases Location: 18085-1823 8 bp Feature: gene Location: 18459-19196 bp Feature: domain Description: COG3907 Location: 18477-19173 bp Feature: domain Description: COG3 907 Location: 18477-19173 bp Feature: gene Location: 19245-21194 bp Feature: domain Description: LTA_synthase Location: 20073-20883 bp Feature: domain Description: LTA_synthase Location: 20073 -20883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG3907 (Membrane-associated enzyme, PAP2 (acid phosphatase) superfamily ), LTA_synthase (cd16015)

Seq: POFV01000093.1 Pseudomonas sp. MPR-R2A5 NODE_93_length_25449_cov_30.7962, whole genome shotgun sequence (25449 bp)
Overview 1 RT 1: 20175-25339 bp Neighborhood of RT #1 [20175, 25368] ACR3 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 20175-21137 bp Feature: domain Description: ACR3 Location: 20190-21117 bp Feature: domain Description: ACR3 Location: 20190-21117 bp Feature: gene Location: 21176-21310 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21182-21293 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21182-21293 bp Feature: gene Location: 21502-23163 bp Feature: RT Description: RVT_N Location: 21547-21790 bp Feature: RT Description: RVT_N Location: 2154 7-21790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21835-22471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21835-224 71 bp Feature: domain Description: GIIM Note: maturase Location: 22528-22756 bp Feature: domain Description: GIIM Note: maturase Location: 22528-22756 bp Feature: gene Location: 23721-25049 bp Feature: domain Description: LZ_Tnp_IS66 Location: 23853-24060 bp Feature: domain Description: LZ_Tnp_IS66 Location: 23853-24 060 bp Feature: domain Description: zf-IS66 Location: 24099-24213 bp Feature: domain Description: zf-IS66 Location: 24 099-24 213 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24255-25029 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24 255-25029 bp Feature: gene Location: 25111-25368 bp Feature: domain Description: TnpB_IS66 Location: 25144-25339 bp Feature: domain Description: TnpB_IS66 Location: 2514 4 -25339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACR3 (COG0798), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: POFV01000097.1 Pseudomonas sp. MPR-R2A5 NODE_97_length_24376_cov_37.9791, whole genome shotgun sequence (24376 bp)
Overview 1 RT 1: 15364-20595 bp Neighborhood of RT #1 [15364, 20678] PRK10431 PRK10319 IS5 RVT-GII GIIM IS5 ABC_phnC Feature: gene Location: 15364-16428 bp Feature: domain Description: PRK10431 Location: 15430-15796 bp Feature: domain Description: PRK10431 Location: 15 430-15 796 bp Feature: domain Description: PRK10319 Location: 15826-16414 bp Feature: domain Description: PRK10319 Location: 15 826-16414 bp Feature: gene Location: 16559-17017 bp Feature: domain Description: IS5 Location: 16562-16991 bp Feature: domain Description: IS5 Location: 165 62-16991 bp Feature: gene Location: 17089-18357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17302-17959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17302-1795 9 bp Feature: domain Description: GIIM Note: maturase Location: 18037-18259 bp Feature: domain Description: GIIM Note: maturase Location: 18037-1825 9 bp Feature: gene Location: 18850-19389 bp Feature: domain Description: IS5 Location: 19039-19366 bp Feature: domain Description: IS5 Location: 19039-19366 bp Feature: gene Location: 19851-20678 bp Feature: domain Description: ABC_phnC Location: 19881-20595 bp Feature: domain Description: ABC_phnC Location: 19881-205 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10431 (N-acetylmuramoyl-l-alanine amidase II; Provisional), PRK10319 (N-acetylmuramoyl-L-alanine amidase AmiA), IS5 (COG3039), RVT-GII, GIIM (pfam08388), ABC_phnC (TIGR02315)