myRT

myRT report for GCA_002883315.1_MPR-LB3

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Seq: POFY01000010.1 Pseudomonas sp. MPR-LB3 NODE_10_length_123288_cov_36.2103, whole genome shotgun sequence (123288 bp)
Overview 1 RT 1: 99443-106760 bp Neighborhood of RT #1 [99443, 107071] groES groEL RVT_N RVT-GII GIIM HNHc COG3907 LTA_synthase Feature: gene Location: 99443-99739 bp Feature: domain Description: groES Location: 99452-99734 bp Feature: domain Description: groES Location: 99452-99734 bp Feature: gene Location: 99790-101436 bp Feature: domain Description: groEL Location: 99796-101419 bp Feature: domain Description: groEL Location: 99796-1 01 41 9 bp Feature: gene Location: 102471-104162 bp Feature: RT Description: RVT_N Location: 102525-102765 bp Feature: RT Description: RVT_N Location: 1 02525-1 02765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102813-103458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0281 3-1 03458 bp Feature: domain Description: GIIM Note: maturase Location: 103509-103743 bp Feature: domain Description: GIIM Note: maturase Location: 1 03509-1 03743 bp Feature: domain Description: HNHc Note: nucleases Location: 103962-104115 bp Feature: domain Description: HNHc Note: nucleases Location: 1 03962-1 041 1 5 bp Feature: gene Location: 104336-105073 bp Feature: domain Description: COG3907 Location: 104354-105050 bp Feature: domain Description: COG3907 Location: 1 04354-1 05050 bp Feature: gene Location: 105122-107071 bp Feature: domain Description: LTA_synthase Location: 105950-106760 bp Feature: domain Description: LTA_synthase Location: 1 05950-1 06760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG3907 (Membrane-associated enzyme, PAP2 (acid phosphatase) superfamily ), LTA_synthase (cd16015), groES (PRK14533), groEL (PRK12852)

Seq: POFY01000001.1 Pseudomonas sp. MPR-LB3 NODE_1_length_322936_cov_30.801, whole genome shotgun sequence (322936 bp)
Overview 1 RT 1: 234117-241320 bp Neighborhood of RT #1 [234117, 241340] Porin_O_P RVT-GII GIIM Hydantoinase_B HyuA Feature: gene Location: 234117-235295 bp Feature: domain Description: Porin_O_P Location: 234342-235179 bp Feature: domain Description: Porin_O_P Location: 2 34342 -2 35179 bp Feature: gene Location: 235476-235955 bp Feature: gene Location: 235960-237168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 236152-236767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 36152 -2 36767 bp Feature: domain Description: GIIM Note: maturase Location: 236821-237049 bp Feature: domain Description: GIIM Note: maturase Location: 2 3682 1-2 37049 bp Feature: gene Location: 237469-239214 bp Feature: domain Description: Hydantoinase_B Location: 237484-239068 bp Feature: domain Description: Hydantoinase_B Location: 2 37484-2 39068 bp Feature: gene Location: 239250-241340 bp Feature: domain Description: HyuA Location: 239265-241320 bp Feature: domain Description: HyuA Location: 2 392 65-2 4132 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Porin_O_P (pfam07396), RVT-GII, GIIM (pfam08388), Hydantoinase_B (pfam02538), HyuA (COG0145)

Seq: POFY01000053.1 Pseudomonas sp. MPR-LB3 NODE_53_length_49643_cov_35.4916, whole genome shotgun sequence (49643 bp)
Overview 1 RT 1: 8094-11467 bp Neighborhood of RT #1 [8094, 11484] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 8094-8468 bp Feature: gene Location: 8479-9036 bp Feature: gene Location: 9080-10198 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9290-9974 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9290-9974 bp Feature: gene Location: 10453-10809 bp Feature: domain Description: Avd_like Location: 10480-10789 bp Feature: domain Description: Avd_like Location: 10480-10789 bp Feature: gene Location: 10864-11484 bp Feature: domain Description: DUF1566 Location: 11104-11467 bp Feature: domain Description: DUF1566 Location: 11104-11467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs

Seq: POFY01000090.1 Pseudomonas sp. MPR-LB3 NODE_90_length_25405_cov_29.5468, whole genome shotgun sequence (25405 bp)
Overview 1 RT 1: 82-5255 bp Neighborhood of RT #1 [82, 5275] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C ACR3 Feature: gene Location: 82-339 bp Feature: domain Description: TnpB_IS66 Location: 115-310 bp Feature: domain Description: TnpB_IS66 Location: 115-310 bp Feature: gene Location: 401-1729 bp Feature: domain Description: LZ_Tnp_IS66 Location: 533-740 bp Feature: domain Description: LZ_Tnp_IS66 Location: 533-74 0 bp Feature: domain Description: zf-IS66 Location: 779-893 bp Feature: domain Description: zf-IS66 Location: 779-893 bp Feature: domain Description: DDE_Tnp_IS66 Location: 935-1709 bp Feature: domain Description: DDE_Tnp_IS66 Location: 935-1709 bp Feature: gene Location: 2287-3948 bp Feature: RT Description: RVT_N Location: 2332-2575 bp Feature: RT Description: RVT_N Location: 2332-2575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620-3256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620-3256 bp Feature: domain Description: GIIM Note: maturase Location: 3313-3541 bp Feature: domain Description: GIIM Note: maturase Location: 3313-354 1 bp Feature: gene Location: 4140-4274 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4146-4257 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4 14 6-4 257 bp Feature: gene Location: 4313-5275 bp Feature: domain Description: ACR3 Location: 4328-5255 bp Feature: domain Description: ACR3 Location: 4 328-5255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), ACR3 (COG0798), TnpB_IS66 (pfam05717)

Seq: POFY01000093.1 Pseudomonas sp. MPR-LB3 NODE_93_length_24376_cov_37.3899, whole genome shotgun sequence (24376 bp)
Overview 1 RT 1: 15364-20595 bp Neighborhood of RT #1 [15364, 20678] PRK10431 PRK10319 IS5 RVT-GII GIIM IS5 ABC_phnC Feature: gene Location: 15364-16428 bp Feature: domain Description: PRK10431 Location: 15430-15796 bp Feature: domain Description: PRK10431 Location: 15 430-15 796 bp Feature: domain Description: PRK10319 Location: 15826-16414 bp Feature: domain Description: PRK10319 Location: 15 826-16414 bp Feature: gene Location: 16559-17017 bp Feature: domain Description: IS5 Location: 16562-16991 bp Feature: domain Description: IS5 Location: 165 62-16991 bp Feature: gene Location: 17089-18357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17302-17959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17302-1795 9 bp Feature: domain Description: GIIM Note: maturase Location: 18037-18259 bp Feature: domain Description: GIIM Note: maturase Location: 18037-1825 9 bp Feature: gene Location: 18850-19389 bp Feature: domain Description: IS5 Location: 19039-19366 bp Feature: domain Description: IS5 Location: 19039-19366 bp Feature: gene Location: 19851-20678 bp Feature: domain Description: ABC_phnC Location: 19881-20595 bp Feature: domain Description: ABC_phnC Location: 19881-205 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10431 (N-acetylmuramoyl-l-alanine amidase II; Provisional), PRK10319 (N-acetylmuramoyl-L-alanine amidase AmiA), IS5 (COG3039), RVT-GII, GIIM (pfam08388), ABC_phnC (TIGR02315)