myRT

myRT report for GCA_002883355.1_MPR-ANB1

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Seq: POGB01000103.1 Pseudomonas sp. MPR-ANB1 NODE_103_length_24376_cov_37.6321, whole genome shotgun sequence (24376 bp)
Overview 1 RT 1: 15364-20595 bp Neighborhood of RT #1 [15364, 20678] PRK10431 PRK10319 IS5 RVT-GII GIIM IS5 ABC_phnC Feature: gene Location: 15364-16428 bp Feature: domain Description: PRK10431 Location: 15430-15796 bp Feature: domain Description: PRK1 0431 Location: 1 5430-1 5796 bp Feature: domain Description: PRK10319 Location: 15826-16414 bp Feature: domain Description: PRK1 031 9 Location: 1 5826-1 641 4 bp Feature: gene Location: 16559-17017 bp Feature: domain Description: IS5 Location: 16562-16991 bp Feature: domain Description: IS5 Location: 1 6562-1 6991 bp Feature: gene Location: 17089-18357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17302-17959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7302-1 7959 bp Feature: domain Description: GIIM Note: maturase Location: 18037-18259 bp Feature: domain Description: GIIM Note: maturase Location: 1 8037-1 8259 bp Feature: gene Location: 18850-19389 bp Feature: domain Description: IS5 Location: 19039-19366 bp Feature: domain Description: IS5 Location: 1 9039-1 9366 bp Feature: gene Location: 19851-20678 bp Feature: domain Description: ABC_phnC Location: 19881-20595 bp Feature: domain Description: ABC_phnC Location: 1 9881 -20595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10431 (N-acetylmuramoyl-l-alanine amidase II; Provisional), PRK10319 (N-acetylmuramoyl-L-alanine amidase AmiA), IS5 (COG3039), RVT-GII, GIIM (pfam08388), ABC_phnC (TIGR02315)

Seq: POGB01000049.1 Pseudomonas sp. MPR-ANB1 NODE_49_length_49639_cov_32.1753, whole genome shotgun sequence (49639 bp)
Overview 1 RT 1: 8090-11463 bp Neighborhood of RT #1 [8090, 11480] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 8090-8464 bp Feature: gene Location: 8475-9032 bp Feature: gene Location: 9076-10194 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9286-9970 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 92 86-9970 bp Feature: gene Location: 10449-10805 bp Feature: domain Description: Avd_like Location: 10476-10785 bp Feature: domain Description: Avd_like Location: 10476-10785 bp Feature: gene Location: 10860-11480 bp Feature: domain Description: DUF1566 Location: 11100-11463 bp Feature: domain Description: DUF1566 Location: 11100-11463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs

Seq: POGB01000004.1 Pseudomonas sp. MPR-ANB1 NODE_4_length_152379_cov_27.7954, whole genome shotgun sequence (152379 bp)
Overview 1 RT 1: 34011-41214 bp Neighborhood of RT #1 [34011, 41234] Porin_O_P RVT-GII GIIM Hydantoinase_B HyuA Feature: gene Location: 34011-35189 bp Feature: domain Description: Porin_O_P Location: 34236-35073 bp Feature: domain Description: Porin_O_P Location: 3 423 6-3 5073 bp Feature: gene Location: 35370-35849 bp Feature: gene Location: 35854-37062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36046-36661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6046-3 6661 bp Feature: domain Description: GIIM Note: maturase Location: 36715-36943 bp Feature: domain Description: GIIM Note: maturase Location: 3 6715-3 6943 bp Feature: gene Location: 37363-39108 bp Feature: domain Description: Hydantoinase_B Location: 37378-38962 bp Feature: domain Description: Hydantoinase_B Location: 3 73 78-3 8962 bp Feature: gene Location: 39144-41234 bp Feature: domain Description: HyuA Location: 39159-41214 bp Feature: domain Description: HyuA Location: 3 9159-41214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Porin_O_P (pfam07396), RVT-GII, GIIM (pfam08388), Hydantoinase_B (pfam02538), HyuA (COG0145)

Seq: POGB01000007.1 Pseudomonas sp. MPR-ANB1 NODE_7_length_123288_cov_34.5149, whole genome shotgun sequence (123288 bp)
Overview 1 RT 1: 99443-106760 bp Neighborhood of RT #1 [99443, 107071] groES groEL RVT_N RVT-GII GIIM HNHc COG3907 LTA_synthase Feature: gene Location: 99443-99739 bp Feature: domain Description: groES Location: 99452-99734 bp Feature: domain Description: groES Location: 994 52-99734 bp Feature: gene Location: 99790-101436 bp Feature: domain Description: groEL Location: 99796-101419 bp Feature: domain Description: groEL Location: 99796-1014 19 bp Feature: gene Location: 102471-104162 bp Feature: RT Description: RVT_N Location: 102525-102765 bp Feature: RT Description: RVT_N Location: 102525-102765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102813-103458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102813-1034 58 bp Feature: domain Description: GIIM Note: maturase Location: 103509-103743 bp Feature: domain Description: GIIM Note: maturase Location: 103509-10374 3 bp Feature: domain Description: HNHc Note: nucleases Location: 103962-104115 bp Feature: domain Description: HNHc Note: nucleases Location: 103962-104 115 bp Feature: gene Location: 104336-105073 bp Feature: domain Description: COG3907 Location: 104354-105050 bp Feature: domain Description: COG3907 Location: 104 354 -105050 bp Feature: gene Location: 105122-107071 bp Feature: domain Description: LTA_synthase Location: 105950-106760 bp Feature: domain Description: LTA_synthase Location: 105950-106760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG3907 (Membrane-associated enzyme, PAP2 (acid phosphatase) superfamily ), LTA_synthase (cd16015), groES (PRK14533), groEL (PRK12852)

Seq: POGB01000097.1 Pseudomonas sp. MPR-ANB1 NODE_97_length_25416_cov_29.7614, whole genome shotgun sequence (25416 bp)
Overview 1 RT 1: 82-5255 bp Neighborhood of RT #1 [82, 5275] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C ACR3 Feature: gene Location: 82-339 bp Feature: domain Description: TnpB_IS66 Location: 115-310 bp Feature: domain Description: TnpB_IS66 Location: 115 -310 bp Feature: gene Location: 401-1729 bp Feature: domain Description: LZ_Tnp_IS66 Location: 533-740 bp Feature: domain Description: LZ_Tnp_IS66 Location: 5 33-740 bp Feature: domain Description: zf-IS66 Location: 779-893 bp Feature: domain Description: zf-IS66 Location: 779-893 bp Feature: domain Description: DDE_Tnp_IS66 Location: 935-1709 bp Feature: domain Description: DDE_Tnp_IS66 Location: 935 -1709 bp Feature: gene Location: 2287-3948 bp Feature: RT Description: RVT_N Location: 2332-2575 bp Feature: RT Description: RVT_N Location: 2332-25 75 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620-3256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620-325 6 bp Feature: domain Description: GIIM Note: maturase Location: 3313-3541 bp Feature: domain Description: GIIM Note: maturase Location: 3313-35 41 bp Feature: gene Location: 4140-4274 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4146-4257 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4146-425 7 bp Feature: gene Location: 4313-5275 bp Feature: domain Description: ACR3 Location: 4328-5255 bp Feature: domain Description: ACR3 Location: 4328-5 25 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), ACR3 (COG0798), TnpB_IS66 (pfam05717)