myRT

myRT report for GCA_002884025.1_MPR-LB5

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Seq: POGC01000101.1 Pseudomonas sp. MPR-LB5 NODE_101_length_24376_cov_45.3989, whole genome shotgun sequence (24376 bp)
Overview 1 RT 1: 15364-20595 bp Neighborhood of RT #1 [15364, 20678] PRK10431 PRK10319 IS5 RVT-GII GIIM IS5 ABC_phnC Feature: gene Location: 15364-16428 bp Feature: domain Description: PRK10431 Location: 15430-15796 bp Feature: domain Description: PRK1 0431 Location: 1 5430-1 5796 bp Feature: domain Description: PRK10319 Location: 15826-16414 bp Feature: domain Description: PRK1 031 9 Location: 1 5826-1 641 4 bp Feature: gene Location: 16559-17017 bp Feature: domain Description: IS5 Location: 16562-16991 bp Feature: domain Description: IS5 Location: 1 6562-1 6991 bp Feature: gene Location: 17089-18357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17302-17959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7302-1 7959 bp Feature: domain Description: GIIM Note: maturase Location: 18037-18259 bp Feature: domain Description: GIIM Note: maturase Location: 1 8037-1 8259 bp Feature: gene Location: 18850-19389 bp Feature: domain Description: IS5 Location: 19039-19366 bp Feature: domain Description: IS5 Location: 1 9039-1 9366 bp Feature: gene Location: 19851-20678 bp Feature: domain Description: ABC_phnC Location: 19881-20595 bp Feature: domain Description: ABC_phnC Location: 1 9881 -20595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10431 (N-acetylmuramoyl-l-alanine amidase II; Provisional), PRK10319 (N-acetylmuramoyl-L-alanine amidase AmiA), IS5 (COG3039), RVT-GII, GIIM (pfam08388), ABC_phnC (TIGR02315)

Seq: POGC01000001.1 Pseudomonas sp. MPR-LB5 NODE_1_length_237125_cov_37.9046, whole genome shotgun sequence (237125 bp)
Overview 1 RT 1: 143837-151040 bp Neighborhood of RT #1 [143837, 151060] Porin_O_P RVT-GII GIIM Hydantoinase_B HyuA Feature: gene Location: 143837-145015 bp Feature: domain Description: Porin_O_P Location: 144062-144899 bp Feature: domain Description: Porin_O_P Location: 144062 -144899 bp Feature: gene Location: 145196-145675 bp Feature: gene Location: 145680-146888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145872-146487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145872 -146487 bp Feature: domain Description: GIIM Note: maturase Location: 146541-146769 bp Feature: domain Description: GIIM Note: maturase Location: 146541-146769 bp Feature: gene Location: 147189-148934 bp Feature: domain Description: Hydantoinase_B Location: 147204-148788 bp Feature: domain Description: Hydantoinase_B Location: 1472 04-148788 bp Feature: gene Location: 148970-151060 bp Feature: domain Description: HyuA Location: 148985-151040 bp Feature: domain Description: HyuA Location: 148985-151040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Porin_O_P (pfam07396), RVT-GII, GIIM (pfam08388), Hydantoinase_B (pfam02538), HyuA (COG0145)

Seq: POGC01000055.1 Pseudomonas sp. MPR-LB5 NODE_55_length_49679_cov_45.3292, whole genome shotgun sequence (49679 bp)
Overview 1 RT 1: 38160-41550 bp Neighborhood of RT #1 [38160, 41550] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 38160-38780 bp Feature: domain Description: DUF1566 Location: 38400-38763 bp Feature: domain Description: DUF1566 Location: 3 8400-3 8763 bp Feature: gene Location: 38835-39191 bp Feature: domain Description: Avd_like Location: 38862-39171 bp Feature: domain Description: Avd_like Location: 3 8862-3 9171 bp Feature: gene Location: 39446-40564 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39656-40340 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 9656-403 40 bp Feature: gene Location: 40608-41165 bp Feature: gene Location: 41176-41550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: POGC01000087.1 Pseudomonas sp. MPR-LB5 NODE_87_length_31614_cov_44.852, whole genome shotgun sequence (31614 bp)
Overview 1 RT 1: 7769-15086 bp Neighborhood of RT #1 [7769, 15397] groES groEL RVT_N RVT-GII GIIM HNHc COG3907 LTA_synthase Feature: gene Location: 7769-8065 bp Feature: domain Description: groES Location: 7778-8060 bp Feature: domain Description: groES Location: 7778-8060 bp Feature: gene Location: 8116-9762 bp Feature: domain Description: groEL Location: 8122-9745 bp Feature: domain Description: groEL Location: 8122-974 5 bp Feature: gene Location: 10797-12488 bp Feature: RT Description: RVT_N Location: 10851-11091 bp Feature: RT Description: RVT_N Location: 10851-11091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11139-11784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11139-11784 bp Feature: domain Description: GIIM Note: maturase Location: 11835-12069 bp Feature: domain Description: GIIM Note: maturase Location: 11835-12069 bp Feature: domain Description: HNHc Note: nucleases Location: 12288-12441 bp Feature: domain Description: HNHc Note: nucleases Location: 12288-124 4 1 bp Feature: gene Location: 12662-13399 bp Feature: domain Description: COG3907 Location: 12680-13376 bp Feature: domain Description: COG3907 Location: 12680-13376 bp Feature: gene Location: 13448-15397 bp Feature: domain Description: LTA_synthase Location: 14276-15086 bp Feature: domain Description: LTA_synthase Location: 14 276-15086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG3907 (Membrane-associated enzyme, PAP2 (acid phosphatase) superfamily ), LTA_synthase (cd16015), groES (PRK14533), groEL (PRK12852)

Seq: POGC01000096.1 Pseudomonas sp. MPR-LB5 NODE_96_length_25416_cov_33.5493, whole genome shotgun sequence (25416 bp)
Overview 1 RT 1: 82-5255 bp Neighborhood of RT #1 [82, 5275] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C ACR3 Feature: gene Location: 82-339 bp Feature: domain Description: TnpB_IS66 Location: 115-310 bp Feature: domain Description: TnpB_IS66 Location: 115 -310 bp Feature: gene Location: 401-1729 bp Feature: domain Description: LZ_Tnp_IS66 Location: 533-740 bp Feature: domain Description: LZ_Tnp_IS66 Location: 5 33-740 bp Feature: domain Description: zf-IS66 Location: 779-893 bp Feature: domain Description: zf-IS66 Location: 779-893 bp Feature: domain Description: DDE_Tnp_IS66 Location: 935-1709 bp Feature: domain Description: DDE_Tnp_IS66 Location: 935 -1709 bp Feature: gene Location: 2287-3948 bp Feature: RT Description: RVT_N Location: 2332-2575 bp Feature: RT Description: RVT_N Location: 2332-25 75 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620-3256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620-325 6 bp Feature: domain Description: GIIM Note: maturase Location: 3313-3541 bp Feature: domain Description: GIIM Note: maturase Location: 3313-35 41 bp Feature: gene Location: 4140-4274 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4146-4257 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4146-425 7 bp Feature: gene Location: 4313-5275 bp Feature: domain Description: ACR3 Location: 4328-5255 bp Feature: domain Description: ACR3 Location: 4328-5 25 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), ACR3 (COG0798), TnpB_IS66 (pfam05717)