myRT

myRT report for GCA_002884045.1_MPR-R5B

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Seq: POGD01000128.1 Pseudomonas sp. MPR-R5B NODE_128_length_17585_cov_65.6675, whole genome shotgun sequence (17585 bp)
Overview 1 RT 1: 7897-12336 bp Neighborhood of RT #1 [7897, 12344] RVT-GII GIIM DDE_Tnp_Tn3 SUKH_5 Feature: gene Location: 7897-8109 bp Feature: gene Location: 8262-8432 bp Feature: gene Location: 8582-10003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8939-9554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8939-9554 bp Feature: domain Description: GIIM Note: maturase Location: 9611-9824 bp Feature: domain Description: GIIM Note: maturase Location: 961 1 -9824 bp Feature: gene Location: 10230-11627 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 10386-11562 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1 0386-1 1 562 bp Feature: gene Location: 11937-12344 bp Feature: domain Description: SUKH_5 Location: 11940-12336 bp Feature: domain Description: SUKH_5 Location: 1 1 940-1 2336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526), SUKH_5 (pfam14567)

Seq: POGD01000147.1 Pseudomonas sp. MPR-R5B NODE_147_length_13666_cov_23.3354, whole genome shotgun sequence (13666 bp)
Overview 1 RT 1: 1270-4556 bp Neighborhood of RT #1 [1270, 4609] RVT-G2L4 xerC Feature: gene Location: 1270-1596 bp Feature: gene Location: 1650-1844 bp Feature: gene Location: 1879-3159 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 2125-2710 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 2 12 5-2 710 bp Feature: gene Location: 3319-3525 bp Feature: gene Location: 3554-4609 bp Feature: domain Description: xerC Location: 3764-4556 bp Feature: domain Description: xerC Location: 3764-4556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4, xerC (PRK01287)

Seq: POGD01000224.1 Pseudomonas sp. MPR-R5B NODE_224_length_1852_cov_77.1476, whole genome shotgun sequence (1852 bp)
Overview 1 RT 1: 65-1851 bp Neighborhood of RT #1 [65, 1851] RVT-GII GIIM Feature: gene Location: 65-1333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-93 5 bp Feature: domain Description: GIIM Note: maturase Location: 1013-1235 bp Feature: domain Description: GIIM Note: maturase Location: 1013 -123 5 bp Feature: gene Location: 1684-1851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: POGD01000025.1 Pseudomonas sp. MPR-R5B NODE_25_length_68914_cov_27.6787, whole genome shotgun sequence (68914 bp)
Overview 1 RT 1: 15831-21073 bp Neighborhood of RT #1 [15831, 21102] ACR3 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 15831-16793 bp Feature: domain Description: ACR3 Location: 15846-16773 bp Feature: domain Description: ACR3 Location: 1584 6-16773 bp Feature: gene Location: 16832-16966 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 16838-16949 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 16838-1694 9 bp Feature: gene Location: 17158-18819 bp Feature: domain Description: RVT_N Location: 17203-17446 bp Feature: domain Description: RVT_N Location: 17203-174 4 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17491-18127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174 91-18127 bp Feature: domain Description: GIIM Note: maturase Location: 18184-18412 bp Feature: domain Description: GIIM Note: maturase Location: 18184 -184 12 bp Feature: gene Location: 19377-20705 bp Feature: domain Description: LZ_Tnp_IS66 Location: 19509-19716 bp Feature: domain Description: LZ_Tnp_IS66 Location: 19509-19716 bp Feature: domain Description: zf-IS66 Location: 19755-19869 bp Feature: domain Description: zf-IS66 Location: 19755-19869 bp Feature: domain Description: DDE_Tnp_IS66 Location: 19911-20685 bp Feature: domain Description: DDE_Tnp_IS66 Location: 19911-20685 bp Feature: gene Location: 20767-21102 bp Feature: domain Description: TnpB_IS66 Location: 20785-21073 bp Feature: domain Description: TnpB_IS66 Location: 20785-21073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACR3 (COG0798), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: POGD01000059.1 Pseudomonas sp. MPR-R5B NODE_59_length_43727_cov_30.6387, whole genome shotgun sequence (43727 bp)
Overview 1 RT 1: 15276-20777 bp Neighborhood of RT #1 [15276, 20959] ribD TIGR00244 RVT_N RVT-GII YkfC HNH YbaY Nnt1 Feature: gene Location: 15276-16412 bp Feature: domain Description: ribD Location: 15312-16383 bp Feature: domain Description: ribD Location: 15 312-16383 bp Feature: gene Location: 16409-16912 bp Feature: domain Description: TIGR00244 Location: 16451-16889 bp Feature: domain Description: TIGR00244 Location: 1645 1-16889 bp Feature: gene Location: 16966-18672 bp Feature: domain Description: RVT_N Location: 17023-17260 bp Feature: domain Description: RVT_N Location: 17023-17260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17311-17947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17311-17947 bp Feature: domain Description: YkfC Location: 18079-18250 bp Feature: domain Description: YkfC Location: 18079-1825 0 bp Feature: domain Description: HNH Note: nucleases Location: 18484-18622 bp Feature: domain Description: HNH Note: nucleases Location: 18484-18622 bp Feature: gene Location: 19854-20309 bp Feature: domain Description: YbaY Location: 19875-20304 bp Feature: domain Description: YbaY Location: 19875 -20304 bp Feature: gene Location: 20306-20959 bp Feature: domain Description: Nnt1 Location: 20366-20777 bp Feature: domain Description: Nnt1 Location: 20366-20777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribD (PRK10786), TIGR00244 (transcriptional regulator NrdR), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YbaY (COG3126), Nnt1 (COG3897)