myRT

myRT report for GCA_002884295.1_GW456-E7

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Seq: POHQ01000073.1 Pseudomonas sp. GW456-E7 NODE_73_length_28290_cov_33.6776, whole genome shotgun sequence (28290 bp)
Overview 1 RT 1: 2-5320 bp Neighborhood of RT #1 [2, 5370] Big_6 Big_6 Big_6 Big_6 RVT-GII GIIM CheY EAL Feature: gene Location: 2-1870 bp Feature: domain Description: Big_6 Location: 656-857 bp Feature: domain Description: Big_6 Location: 656-857 bp Feature: domain Description: Big_6 Location: 956-1154 bp Feature: domain Description: Big_6 Location: 956-1 1 54 bp Feature: domain Description: Big_6 Location: 1259-1457 bp Feature: domain Description: Big_6 Location: 1 259-1 457 bp Feature: domain Description: Big_6 Location: 1559-1757 bp Feature: domain Description: Big_6 Location: 1 559-1 757 bp Feature: gene Location: 1885-2022 bp Feature: gene Location: 2149-3570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2506-3121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2506-31 21 bp Feature: domain Description: GIIM Note: maturase Location: 3178-3403 bp Feature: domain Description: GIIM Note: maturase Location: 31 78-3403 bp Feature: gene Location: 3720-3890 bp Feature: gene Location: 4171-5370 bp Feature: domain Description: CheY Location: 4177-4396 bp Feature: domain Description: CheY Location: 41 77-4396 bp Feature: domain Description: EAL Location: 4618-5320 bp Feature: domain Description: EAL Location: 461 8-5320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Big_6 (pfam17936), CheY (COG0784), EAL (smart00052)

Seq: POHQ01000076.1 Pseudomonas sp. GW456-E7 NODE_76_length_27647_cov_26.3518, whole genome shotgun sequence (27647 bp)
Overview 1 RT 1: 3-7507 bp Neighborhood of RT #1 [3, 7524] InsE RVT-GII TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 3-509 bp Feature: gene Location: 726-902 bp Feature: domain Description: InsE Location: 729-888 bp Feature: domain Description: InsE Location: 72 9-888 bp Feature: gene Location: 950-2746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1664-2354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1664-2 354 bp Feature: gene Location: 3040-3477 bp Feature: domain Description: TnpB_IS66 Location: 3253-3460 bp Feature: domain Description: TnpB_IS66 Location: 32 53-3460 bp Feature: gene Location: 3651-4133 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3786-3990 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3786-3990 bp Feature: domain Description: zf-IS66 Location: 4017-4131 bp Feature: domain Description: zf-IS66 Location: 4017-4131 bp Feature: gene Location: 4218-4979 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4221-4959 bp Feature: domain Description: DDE_Tnp_IS66 Location: 42 2 1-4959 bp Feature: gene Location: 5536-6120 bp Feature: RT Description: RVT_N Location: 5581-5818 bp Feature: RT Description: RVT_N Location: 5581-5818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5869-5956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5869-5956 bp Feature: gene Location: 6143-6880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6146-6506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6146-6506 bp Feature: domain Description: GIIM Note: maturase Location: 6566-6791 bp Feature: domain Description: GIIM Note: maturase Location: 6566-6791 bp Feature: gene Location: 6977-7198 bp Feature: gene Location: 7390-7524 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7396-7507 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7396-7507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), InsE (COG2963), RVT-GII, DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817)