myRT

myRT report for GCA_002884955.1_ASM288495v1

Download annotations/find similar RTs

Seq: PNHS01000001.1 Aerococcus urinae strain UMB0088 .16933_8_23.1, whole genome shotgun sequence (373680 bp)
Overview 1 RT 1: 369088-373480 bp Neighborhood of RT #1 [369088, 373677] MdlB MdlB RVT-GII GIIM Feature: gene Location: 369088-370824 bp Feature: domain Description: MdlB Location: 369094-370795 bp Feature: domain Description: MdlB Location: 369094-370795 bp Feature: gene Location: 370814-372613 bp Feature: domain Description: MdlB Location: 370832-372578 bp Feature: domain Description: MdlB Location: 370832-372578 bp Feature: gene Location: 372763-373677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372766-373222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372766-373222 bp Feature: domain Description: GIIM Note: maturase Location: 373282-373480 bp Feature: domain Description: GIIM Note: maturase Location: 373282-373480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), RVT-GII, GIIM (pfam08388)

Seq: PNHS01000014.1 Aerococcus urinae strain UMB0088 .16933_8_23.14, whole genome shotgun sequence (34335 bp)
Overview 1 RT 1: 1-4812 bp Neighborhood of RT #1 [1, 4889] RVT-GII GIIM PepN GlpR Feature: gene Location: 1-891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-490 bp Feature: domain Description: GIIM Note: maturase Location: 550-748 bp Feature: domain Description: GIIM Note: maturase Location: 550-748 bp Feature: gene Location: 1054-3585 bp Feature: domain Description: PepN Location: 1072-3544 bp Feature: domain Description: PepN Location: 1072 -3544 bp Feature: gene Location: 4113-4889 bp Feature: domain Description: GlpR Location: 4116-4812 bp Feature: domain Description: GlpR Location: 4116-4812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PepN (COG0308), GlpR (COG1349)

Seq: PNHS01000020.1 Aerococcus urinae strain UMB0088 .16933_8_23.20, whole genome shotgun sequence (15080 bp)
Overview 1 RT 1: 3-5936 bp Neighborhood of RT #1 [3, 5962] RVT-GII RVT-GII GIIM RVT-GII GIIM MFS_YcxA_like Lpd Feature: gene Location: 3-716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261-699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261-699 bp Feature: gene Location: 746-2032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962-1577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962-1577 bp Feature: domain Description: GIIM Note: maturase Location: 1637-1835 bp Feature: domain Description: GIIM Note: maturase Location: 163 7-183 5 bp Feature: gene Location: 2194-3015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2197-2560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2197-2560 bp Feature: domain Description: GIIM Note: maturase Location: 2620-2818 bp Feature: domain Description: GIIM Note: maturase Location: 2620-2818 bp Feature: gene Location: 3098-4339 bp Feature: domain Description: MFS_YcxA_like Location: 3152-4301 bp Feature: domain Description: MFS_YcxA_like Location: 3 152-43 01 bp Feature: gene Location: 4598-5962 bp Feature: domain Description: Lpd Location: 4625-5936 bp Feature: domain Description: Lpd Location: 4625-593 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MFS_YcxA_like (cd17355), Lpd (COG1249)

Seq: PNHS01000021.1 Aerococcus urinae strain UMB0088 .16933_8_23.21, whole genome shotgun sequence (13129 bp)
Overview 1 RT 1: 1537-6803 bp Neighborhood of RT #1 [1537, 7078] PRK15057 RVT-AbiK RfbX GT4_PimA-like Feature: gene Location: 1537-2724 bp Feature: domain Description: PRK15057 Location: 1561-2713 bp Feature: domain Description: PRK15057 Location: 1561-2713 bp Feature: gene Location: 2768-3715 bp Feature: gene Location: 3739-4572 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 4198-4564 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 4 198-4 564 bp Feature: gene Location: 4669-5907 bp Feature: domain Description: RfbX Location: 4750-5881 bp Feature: domain Description: RfbX Location: 4 750-5881 bp Feature: gene Location: 5900-7078 bp Feature: domain Description: GT4_PimA-like Location: 5906-6803 bp Feature: domain Description: GT4 _PimA-like Location: 5906-6803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15057 (UDP-glucose 6-dehydrogenase; Provisional), RVT-AbiK, RfbX (COG2244), GT4_PimA-like (cd03801)