myRT

myRT report for GCA_002885875.1_ASM288587v1

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Seq: NSIY01000212.1 Escherichia coli strain 751 751_S75_R1__paired__contig_212, whole genome shotgun sequence (1348 bp)
Overview 1 RT 1: 3-609 bp Neighborhood of RT #1 [3, 1346] RVT-Retrons Feature: gene Location: 3-1346 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6-609 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6-609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: NSIY01000065.1 Escherichia coli strain 751 751_S75_R1__paired__contig_65, whole genome shotgun sequence (24671 bp)
Overview 1 RT 1: 1660-5796 bp Neighborhood of RT #1 [1660, 5796] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1660-1893 bp Feature: domain Description: DUF905 Location: 1690-1888 bp Feature: domain Description: DUF905 Location: 1690-1888 bp Feature: gene Location: 1961-2413 bp Feature: domain Description: PRK13732 Location: 1967-2411 bp Feature: domain Description: PRK13732 Location: 1967-2 411 bp Feature: gene Location: 2608-4509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2875-3706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 875-3706 bp Feature: domain Description: Intron_maturas2 Location: 3820-4078 bp Feature: domain Description: Intron_maturas2 Location: 382 0-4078 bp Feature: domain Description: HNHc Note: nucleases Location: 4252-4414 bp Feature: domain Description: HNHc Note: nucleases Location: 42 52 -4414 bp Feature: gene Location: 5251-5454 bp Feature: gene Location: 5506-5796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NSIY01000078.1 Escherichia coli strain 751 751_S75_R1__paired__contig_78, whole genome shotgun sequence (14515 bp)
Overview 1 RT 1: 11889-13989 bp Neighborhood of RT #1 [11889, 14513] SLATT_5 RVT-UG17 Feature: gene Location: 11889-12065 bp Feature: gene Location: 12473-13177 bp Feature: domain Description: SLATT_5 Location: 12635-13145 bp Feature: domain Description: SLATT_5 Location: 1263 5-13 145 bp Feature: gene Location: 13155-14513 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 13383-13989 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 13 3 83 -13 989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17

Seq: NSIY01000079.1 Escherichia coli strain 751 751_S75_R1__paired__contig_79, whole genome shotgun sequence (22684 bp)
Overview 1 RT 1: 8126-12176 bp Neighborhood of RT #1 [8126, 12229] InsE PHA02517 RVT-GII GIIM PHA02517 autotrans_barl Feature: gene Location: 8126-8452 bp Feature: domain Description: InsE Location: 8129-8450 bp Feature: domain Description: InsE Location: 8129-84 50 bp Feature: gene Location: 8452-8931 bp Feature: domain Description: PHA02517 Location: 8512-8866 bp Feature: domain Description: PHA02517 Location: 8512-8866 bp Feature: gene Location: 9523-11046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9796-10528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9796-10528 bp Feature: domain Description: GIIM Note: maturase Location: 10603-10801 bp Feature: domain Description: GIIM Note: maturase Location: 10603-10801 bp Feature: gene Location: 11163-11609 bp Feature: domain Description: PHA02517 Location: 11166-11607 bp Feature: domain Description: PHA02517 Location: 11166-11607 bp Feature: gene Location: 11612-12229 bp Feature: domain Description: autotrans_barl Location: 11735-12176 bp Feature: domain Description: autotrans_barl Location: 11735-12176 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), autotrans_barl (TIGR01414)