myRT

myRT report for GCA_002885955.2_ASM288595v2

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Seq: POQS01000012.1 Achromobacter pulmonis strain ANB-1 scaffold12, whole genome shotgun sequence (65933 bp)
Overview 1 RT 1: 842-7226 bp Neighborhood of RT #1 [842, 7226] PHA02517 RVT-GII GIIM RVT_N RVT-GII GIIM HNH Feature: gene Location: 842-1243 bp Feature: domain Description: PHA02517 Location: 848-1208 bp Feature: domain Description: PHA0251 7 Location: 848-1 208 bp Feature: gene Location: 1418-1618 bp Feature: gene Location: 1870-3402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2143-2881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 43-2881 bp Feature: domain Description: GIIM Note: maturase Location: 2977-3154 bp Feature: domain Description: GIIM Note: maturase Location: 2977-31 54 bp Feature: gene Location: 3983-5683 bp Feature: RT Description: RVT_N Location: 4040-4283 bp Feature: RT Description: RVT_N Location: 4040-4283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4328-4973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4328-4973 bp Feature: domain Description: GIIM Note: maturase Location: 5030-5261 bp Feature: domain Description: GIIM Note: maturase Location: 5030-5261 bp Feature: domain Description: HNH Note: nucleases Location: 5519-5648 bp Feature: domain Description: HNH Note: nucleases Location: 551 9-5648 bp Feature: gene Location: 6166-6522 bp Feature: gene Location: 6903-7226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), HNH (pfam01844)

Seq: POQS01000002.1 Achromobacter pulmonis strain ANB-1 scaffold2, whole genome shotgun sequence (1070890 bp)
Overview 1 RT 1: 214972-221623 bp Neighborhood of RT #1 [214972, 221628] PRK11070 MFS_ExuT_GudP_like RVT-GII GIIM HNHc MFS_ExuT_GudP_like prfB Feature: gene Location: 214972-216480 bp Feature: domain Description: PRK11070 Location: 214975-216472 bp Feature: domain Description: PRK11070 Location: 2 14975-2 16472 bp Feature: gene Location: 216593-217141 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 216620-217112 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 2 1662 0-2 17112 bp Feature: gene Location: 217204-218505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217207-217783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 172 07-2 17783 bp Feature: domain Description: GIIM Note: maturase Location: 217837-218068 bp Feature: domain Description: GIIM Note: maturase Location: 2 17837-2 18068 bp Feature: domain Description: HNHc Note: nucleases Location: 218302-218449 bp Feature: domain Description: HNHc Note: nucleases Location: 2 18302 -2 18449 bp Feature: gene Location: 219425-220306 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 219506-220211 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 2 19506-2 2 02 11 bp Feature: gene Location: 220483-221628 bp Feature: domain Description: prfB Location: 220591-221623 bp Feature: domain Description: prfB Location: 2 2 0591-2 2 162 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11070 (single-stranded-DNA-specific exonuclease RecJ), MFS_ExuT_GudP_like (cd17319), RVT-GII, GIIM (pfam08388), HNHc (smart00507), prfB (TIGR00020)

Seq: POQS01000024.1 Achromobacter pulmonis strain ANB-1 scaffold24, whole genome shotgun sequence (8794 bp)
Overview 1 RT 1: 99-2911 bp Neighborhood of RT #1 [99, 2911] RVT-DGRs Avd_like Feature: gene Location: 99-1145 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 312-921 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 12-921 bp Feature: gene Location: 1475-1837 bp Feature: domain Description: Avd_like Location: 1523-1826 bp Feature: domain Description: Avd_like Location: 1523 -1826 bp Feature: gene Location: 1844-2911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: POQS01000026.1 Achromobacter pulmonis strain ANB-1 scaffold26, whole genome shotgun sequence (5629 bp)
Overview 1 RT 1: 2-3240 bp Neighborhood of RT #1 [2, 3347] DEXDc_RapA RVT_N RVT-GII SF2_C_SNF conj_PilL Feature: gene Location: 2-253 bp Feature: domain Description: DEXDc_RapA Location: 74-224 bp Feature: domain Description: DEXDc_RapA Location: 74 -224 bp Feature: gene Location: 850-1347 bp Feature: RT Description: RVT_N Location: 907-1150 bp Feature: RT Description: RVT_N Location: 907-1150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1195-1333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1195-1333 bp Feature: gene Location: 1486-2535 bp Feature: domain Description: SF2_C_SNF Location: 1975-2371 bp Feature: domain Description: SF2_C_SNF Location: 1975-2371 bp Feature: gene Location: 2769-3347 bp Feature: domain Description: conj_PilL Location: 2931-3240 bp Feature: domain Description: conj_PilL Location: 2931-324 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SF2_C_SNF (cd18793), conj_PilL (TIGR03748), RVT_N (pfam13655), RVT-GII

Seq: POQS01000033.1 Achromobacter pulmonis strain ANB-1 scaffold33, whole genome shotgun sequence (3410 bp)
Overview 1 RT 1: 1-3408 bp Neighborhood of RT #1 [1, 3408] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-771 bp Feature: gene Location: 876-3083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2169-2361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2169-2361 bp Feature: domain Description: Intron_maturas2 Location: 2442-2742 bp Feature: domain Description: Intron_maturas2 Location: 2442-2742 bp Feature: domain Description: HNHc Note: nucleases Location: 2880-3060 bp Feature: domain Description: HNHc Note: nucleases Location: 2880-3060 bp Feature: gene Location: 3229-3408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: POQS01000005.1 Achromobacter pulmonis strain ANB-1 scaffold5, whole genome shotgun sequence (550120 bp)
Overview 1 RT 1: 271-6462 bp Neighborhood of RT #1 [271, 6626] RVT-GII Intron_maturas2 HNHc DEXHc_Snf SF2_C_SNF Feature: gene Location: 271-576 bp Feature: gene Location: 712-1050 bp Feature: gene Location: 1720-3453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1900-2731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1900-2731 bp Feature: domain Description: Intron_maturas2 Location: 2812-3112 bp Feature: domain Description: Intron_maturas2 Location: 2812-3112 bp Feature: domain Description: HNHc Note: nucleases Location: 3250-3430 bp Feature: domain Description: HNHc Note: nucleases Location: 3250-3430 bp Feature: gene Location: 3645-4469 bp Feature: domain Description: DEXHc_Snf Location: 4290-4422 bp Feature: domain Description: DEXHc_Snf Location: 4290-4422 bp Feature: gene Location: 5763-6626 bp Feature: domain Description: SF2_C_SNF Location: 6081-6462 bp Feature: domain Description: SF2_C_SNF Location: 6 081-6 46 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SF2_C_SNF (cd18793)

Seq: POQS01000008.1 Achromobacter pulmonis strain ANB-1 scaffold8, whole genome shotgun sequence (431143 bp)
Overview 1 RT 1: 328090-333689 bp Neighborhood of RT #1 [328090, 333736] RVT-GII Intron_maturas2 HNHc DEXDc_RapA DEXDc_RapA HNHc Feature: gene Location: 328090-328398 bp Feature: gene Location: 328495-328842 bp Feature: gene Location: 329512-331245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329692-330523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329692-330523 bp Feature: domain Description: Intron_maturas2 Location: 330604-330904 bp Feature: domain Description: Intron_maturas2 Location: 330604-330904 bp Feature: domain Description: HNHc Note: nucleases Location: 331042-331222 bp Feature: domain Description: HNHc Note: nucleases Location: 331042-331222 bp Feature: gene Location: 331386-332261 bp Feature: domain Description: DEXDc_RapA Location: 331407-331476 bp Feature: domain Description: DEXDc_RapA Location: 331407 -33147 6 bp Feature: domain Description: DEXDc_RapA Location: 332019-332238 bp Feature: domain Description: DEXDc_RapA Location: 332019-332238 bp Feature: gene Location: 333260-333736 bp Feature: domain Description: HNHc Note: nucleases Location: 333533-333689 bp Feature: domain Description: HNHc Note: nucleases Location: 333533-333689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DEXDc_RapA (cd18011)