myRT

myRT report for GCA_002886185.1_ASM288618v1

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Seq: KZ614146.1 Salipaludibacillus neizhouensis strain DSM 19794 genomic scaffold Scaffold1, whole genome shotgun sequence (3626337 bp)
Overview 1 RT 1: 39743-44291 bp 2 RT 2: 436814-440746 bp 3 RT 3: 1241989-1248896 bp 4 RT 4: 3169881-3173178 bp Neighborhood of RT #1 [39743, 44291] YcaP RVT-GII GerA Neighborhood of RT #2 [436814, 440775] RVT-GII GIIM INT_ICEBs1_C_like Neighborhood of RT #3 [1241989, 1248896] COG3547 RVT-GII RVT-GII GIIM group_II_RT_mat Neighborhood of RT #4 [3169881, 3173178] RVT-GII GIIM Feature: gene Location: 39743-39919 bp Feature: gene Location: 40373-41011 bp Feature: domain Description: YcaP Location: 40409-40898 bp Feature: domain Description: YcaP Location: 40409-40898 bp Feature: gene Location: 41769-42485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42009-42456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42009-42456 bp Feature: gene Location: 42510-43805 bp Feature: domain Description: GerA Location: 42540-43800 bp Feature: domain Description: GerA Location: 42540-43800 bp Feature: gene Location: 44088-44291 bp Feature: gene Location: 436814-437089 bp Feature: gene Location: 437051-437218 bp Feature: gene Location: 437312-438700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437633-438248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437633-438248 bp Feature: domain Description: GIIM Note: maturase Location: 438305-438515 bp Feature: domain Description: GIIM Note: maturase Location: 438305-43851 5 bp Feature: gene Location: 439645-439785 bp Feature: gene Location: 440623-440775 bp Feature: domain Description: INT_ICEBs1_C_like Location: 440629-440746 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 440629-440746 bp Feature: gene Location: 1241989-1243263 bp Feature: domain Description: COG3547 Location: 1242055-1243177 bp Feature: domain Description: COG3547 Location: 1 242055-1 2431 77 bp Feature: gene Location: 1243309-1243605 bp Feature: gene Location: 1244579-1245430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1244837-1245389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 244837-1 245389 bp Feature: gene Location: 1245506-1245703 bp Feature: gene Location: 1245919-1246980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1246123-1246777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2461 23-1 246777 bp Feature: domain Description: GIIM Note: maturase Location: 1246858-1246978 bp Feature: domain Description: GIIM Note: maturase Location: 1 246858-1 246978 bp Feature: gene Location: 1247279-1248208 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1247288-1247651 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 247288-1 247651 bp Feature: gene Location: 1248720-1248896 bp Feature: gene Location: 3169881-3170027 bp Feature: gene Location: 3170186-3170590 bp Feature: gene Location: 3170793-3172181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3171114-3171729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 71 1 1 4-31 71 729 bp Feature: domain Description: GIIM Note: maturase Location: 3171786-3172002 bp Feature: domain Description: GIIM Note: maturase Location: 31 71 786-31 72002 bp Feature: gene Location: 3172491-3172748 bp Feature: gene Location: 3173035-3173178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcaP (COG2323), RVT-GII, GerA (pfam03323), GIIM (pfam08388), INT_ICEBs1_C_like (cd01189), COG3547 (Transposase ), group_II_RT_mat (TIGR04416)

Seq: KZ614147.1 Salipaludibacillus neizhouensis strain DSM 19794 genomic scaffold Scaffold2, whole genome shotgun sequence (1328419 bp)
Overview 1 RT 1: 24884-30906 bp 2 RT 2: 533311-538515 bp Neighborhood of RT #1 [24884, 30908] USP_OKCHK RVT-GII PRK09284 Neighborhood of RT #2 [533311, 538604] PRK05457 RVT-GII GIIM GltP NPD_like Feature: gene Location: 24884-25618 bp Feature: domain Description: USP_OKCHK Location: 24983-25352 bp Feature: domain Description: USP_OKCHK Location: 2 4983-2 5352 bp Feature: gene Location: 25733-25924 bp Feature: gene Location: 26380-28005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26638-27337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6638-2 7337 bp Feature: gene Location: 28933-29106 bp Feature: gene Location: 29124-30908 bp Feature: domain Description: PRK09284 Location: 29151-30906 bp Feature: domain Description: PRK092 84 Location: 2 9151-30906 bp Feature: gene Location: 533311-534231 bp Feature: domain Description: PRK05457 Location: 533320-534226 bp Feature: domain Description: PRK05457 Location: 53332 0-5342 2 6 bp Feature: gene Location: 534469-534636 bp Feature: gene Location: 534730-536118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535051-535666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535051-535666 bp Feature: domain Description: GIIM Note: maturase Location: 535723-535933 bp Feature: domain Description: GIIM Note: maturase Location: 53572 3-535933 bp Feature: gene Location: 536215-537441 bp Feature: domain Description: GltP Location: 536248-537427 bp Feature: domain Description: GltP Location: 5362 48-53742 7 bp Feature: gene Location: 537636-538604 bp Feature: domain Description: NPD_like Location: 537681-538515 bp Feature: domain Description: NPD_like Location: 537681-538515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT USP_OKCHK (cd01987), RVT-GII, PRK09284 (thiamine biosynthesis protein ThiC; Provisional), PRK05457 (protease HtpX), GIIM (pfam08388), GltP (COG1301), NPD_like (cd04730)

Seq: KZ614148.1 Salipaludibacillus neizhouensis strain DSM 19794 genomic scaffold Scaffold3, whole genome shotgun sequence (457805 bp)
Overview 1 RT 1: 13899-17612 bp 2 RT 2: 215825-221144 bp Neighborhood of RT #1 [13899, 17612] SDH_SDR_c_like RVT-GII Neighborhood of RT #2 [215825, 221182] RVT-GII COG4278 PaaK Feature: gene Location: 13899-14675 bp Feature: domain Description: SDH_SDR_c_like Location: 13911-14670 bp Feature: domain Description: SDH_SDR_c_like Location: 13 911-14670 bp Feature: gene Location: 14912-15061 bp Feature: gene Location: 15155-15544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15476-15524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15476-15524 bp Feature: gene Location: 16969-17406 bp Feature: gene Location: 17442-17612 bp Feature: gene Location: 215825-215977 bp Feature: gene Location: 216134-216652 bp Feature: gene Location: 217574-218428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217832-218387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21783 2-2183 87 bp Feature: gene Location: 219271-219630 bp Feature: domain Description: COG4278 Location: 219301-219472 bp Feature: domain Description: COG4278 Location: 2193 01-219472 bp Feature: gene Location: 219959-221182 bp Feature: domain Description: PaaK Location: 220055-221144 bp Feature: domain Description: PaaK Location: 220055-221144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SDH_SDR_c_like (cd05322), RVT-GII, COG4278 (Uncharacterized protein ), PaaK (COG1541)