myRT

myRT report for GCA_002887055.1_ASM288705v1

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Seq: PGHP01000026.1 Escherichia coli strain YD626 YD626_26, whole genome shotgun sequence (57718 bp)
Overview 1 RT 1: 41605-45487 bp Neighborhood of RT #1 [41605, 45492] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 41605-42321 bp Feature: domain Description: rph Location: 41608-42316 bp Feature: domain Description: rph Location: 41 608-4231 6 bp Feature: gene Location: 42372-43028 bp Feature: domain Description: pyrE Location: 42390-43023 bp Feature: domain Description: pyrE Location: 42390-43023 bp Feature: gene Location: 43326-44285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43461-44010 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43461 -4401 0 bp Feature: gene Location: 44331-44927 bp Feature: domain Description: slmA Location: 44337-44913 bp Feature: domain Description: slmA Location: 44337-4491 3 bp Feature: gene Location: 45034-45492 bp Feature: domain Description: dut Location: 45040-45487 bp Feature: domain Description: dut Location: 45040-45487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: PGHP01000044.1 Escherichia coli strain YD626 YD626_44, whole genome shotgun sequence (26740 bp)
Overview 1 RT 1: 25347-26608 bp Neighborhood of RT #1 [25347, 26739] RVT-GII GIIM RVT-GII Feature: gene Location: 25347-25517 bp Feature: gene Location: 25655-25834 bp Feature: gene Location: 25933-26454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25939-26221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5939-2 62 2 1 bp Feature: domain Description: GIIM Note: maturase Location: 26269-26449 bp Feature: domain Description: GIIM Note: maturase Location: 2 62 69-2 6449 bp Feature: gene Location: 26482-26739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26530-26608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6530-2 6608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGHP01000052.1 Escherichia coli strain YD626 YD626_52, whole genome shotgun sequence (13675 bp)
Overview 1 RT 1: 11808-13636 bp Neighborhood of RT #1 [11808, 13674] Asparaginase_2 RVT-GII Feature: gene Location: 11808-12839 bp Feature: domain Description: Asparaginase_2 Location: 11898-12831 bp Feature: domain Description: Asparaginase_2 Location: 11898-1283 1 bp Feature: gene Location: 13166-13315 bp Feature: gene Location: 13363-13674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13534-13636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 53 4-13 63 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII