myRT

myRT report for GCA_002890365.1_ASM289036v1

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Seq: MDXF01000011.1 Pseudomonas syringae pv. actinidiae strain M227 M227_011, whole genome shotgun sequence (4432 bp)
Overview 1 RT 1: 1595-3414 bp Neighborhood of RT #1 [1595, 4205] PRK14975 RVT-UG9 Feature: gene Location: 1595-2575 bp Feature: domain Description: PRK14975 Location: 1799-2516 bp Feature: domain Description: PRK1 4975 Location: 1 799-251 6 bp Feature: gene Location: 2688-2972 bp Feature: gene Location: 3135-4205 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3141-3414 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 31 41 -341 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), RVT-UG9

Seq: MDXF01000019.1 Pseudomonas syringae pv. actinidiae strain M227 M227_019, whole genome shotgun sequence (84267 bp)
Overview 1 RT 1: 35920-41859 bp Neighborhood of RT #1 [35920, 41859] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 35920-37173 bp Feature: domain Description: COG3666 Location: 35962-36403 bp Feature: domain Description: COG3666 Location: 35962 -36403 bp Feature: domain Description: DDE_Tnp_1_6 Location: 36880-37105 bp Feature: domain Description: DDE_Tnp_1_6 Location: 36880-37105 bp Feature: gene Location: 37424-37585 bp Feature: gene Location: 37671-39380 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37824-38421 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3782 4-3842 1 bp Feature: gene Location: 39824-41242 bp Feature: domain Description: ComA-like_MBL-fold Location: 40373-40859 bp Feature: domain Description: ComA-like_MBL-fold Location: 40373-40859 bp Feature: gene Location: 41596-41859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: MDXF01000149.1 Pseudomonas syringae pv. actinidiae strain M227 M227_149, whole genome shotgun sequence (37320 bp)
Overview 1 RT 1: 30140-36076 bp Neighborhood of RT #1 [30140, 36111] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30140-31228 bp Feature: domain Description: modC_ABC Location: 30155-31220 bp Feature: domain Description: modC_ABC Location: 3 0155-3 1220 bp Feature: gene Location: 31317-32372 bp Feature: domain Description: Top1 Location: 31350-32364 bp Feature: domain Description: Top1 Location: 3 13 50-3 23 64 bp Feature: gene Location: 33203-35038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33464-34277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 464-3 4277 bp Feature: domain Description: Intron_maturas2 Location: 34373-34688 bp Feature: domain Description: Intron_maturas2 Location: 3 43 73 -3 4688 bp Feature: domain Description: HNHc Note: nucleases Location: 34811-34976 bp Feature: domain Description: HNHc Note: nucleases Location: 3 4811-3 4976 bp Feature: gene Location: 35278-35469 bp Feature: gene Location: 35476-36111 bp Feature: domain Description: DUF2625 Location: 35488-36076 bp Feature: domain Description: DUF2625 Location: 3 5488-3 6076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: MDXF01000281.1 Pseudomonas syringae pv. actinidiae strain M227 M227_281, whole genome shotgun sequence (1264 bp)
Overview 1 RT 1: 87-1197 bp Neighborhood of RT #1 [87, 1262] RVT-GII GIIM Feature: gene Location: 87-1262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327-942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327-94 2 bp Feature: domain Description: GIIM Note: maturase Location: 987-1197 bp Feature: domain Description: GIIM Note: maturase Location: 987-1197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MDXF01000287.1 Pseudomonas syringae pv. actinidiae strain M227 M227_287, whole genome shotgun sequence (1526 bp)
Overview 1 RT 1: 4-1525 bp Neighborhood of RT #1 [4, 1525] RVT-GII GIIM Feature: gene Location: 4-1272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: gene Location: 1346-1525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)