myRT

myRT report for GCA_002890475.1_ASM289047v1

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Seq: MDXG01000012.1 Pseudomonas syringae pv. actinidiae strain M401 M401_012, whole genome shotgun sequence (4618 bp)
Overview 1 RT 1: 1773-3592 bp Neighborhood of RT #1 [1773, 4383] PRK14975 RVT-UG9 Feature: gene Location: 1773-2753 bp Feature: domain Description: PRK14975 Location: 1977-2694 bp Feature: domain Description: PRK1 4975 Location: 1 977-2694 bp Feature: gene Location: 2866-3150 bp Feature: gene Location: 3313-4383 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3319-3592 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 331 9-3592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), RVT-UG9

Seq: MDXG01000019.1 Pseudomonas syringae pv. actinidiae strain M401 M401_019, whole genome shotgun sequence (84275 bp)
Overview 1 RT 1: 35920-41859 bp Neighborhood of RT #1 [35920, 41859] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 35920-37173 bp Feature: domain Description: COG3666 Location: 35962-36403 bp Feature: domain Description: COG3666 Location: 35962 -36403 bp Feature: domain Description: DDE_Tnp_1_6 Location: 36880-37105 bp Feature: domain Description: DDE_Tnp_1_6 Location: 36880-37105 bp Feature: gene Location: 37424-37585 bp Feature: gene Location: 37671-39380 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37824-38421 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3782 4-3842 1 bp Feature: gene Location: 39824-41242 bp Feature: domain Description: ComA-like_MBL-fold Location: 40373-40859 bp Feature: domain Description: ComA-like_MBL-fold Location: 40373-40859 bp Feature: gene Location: 41596-41859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: MDXG01000136.1 Pseudomonas syringae pv. actinidiae strain M401 M401_136, whole genome shotgun sequence (37569 bp)
Overview 1 RT 1: 30381-36317 bp Neighborhood of RT #1 [30381, 36352] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30381-31469 bp Feature: domain Description: modC_ABC Location: 30396-31461 bp Feature: domain Description: modC_ABC Location: 3 03 96-3 1461 bp Feature: gene Location: 31558-32613 bp Feature: domain Description: Top1 Location: 31591-32605 bp Feature: domain Description: Top1 Location: 3 1591-3 2605 bp Feature: gene Location: 33444-35279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33705-34518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 705-3 4518 bp Feature: domain Description: Intron_maturas2 Location: 34614-34929 bp Feature: domain Description: Intron_maturas2 Location: 3 4614-3 4929 bp Feature: domain Description: HNHc Note: nucleases Location: 35052-35217 bp Feature: domain Description: HNHc Note: nucleases Location: 3 5052-3 5217 bp Feature: gene Location: 35519-35710 bp Feature: gene Location: 35717-36352 bp Feature: domain Description: DUF2625 Location: 35729-36317 bp Feature: domain Description: DUF2625 Location: 3 5729-3 63 17 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: MDXG01000248.1 Pseudomonas syringae pv. actinidiae strain M401 M401_248, whole genome shotgun sequence (1264 bp)
Overview 1 RT 1: 87-1197 bp Neighborhood of RT #1 [87, 1262] RVT-GII GIIM Feature: gene Location: 87-1262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327-942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327-94 2 bp Feature: domain Description: GIIM Note: maturase Location: 987-1197 bp Feature: domain Description: GIIM Note: maturase Location: 987-1197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MDXG01000254.1 Pseudomonas syringae pv. actinidiae strain M401 M401_254, whole genome shotgun sequence (1534 bp)
Overview 1 RT 1: 4-1531 bp Neighborhood of RT #1 [4, 1531] RVT-GII GIIM Feature: gene Location: 4-1272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: gene Location: 1346-1531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)