myRT

myRT report for GCA_002890485.1_ASM289048v1

Download annotations/find similar RTs

Seq: MDXH01000004.1 Pseudomonas syringae pv. actinidiae strain M256 M256_004, whole genome shotgun sequence (48453 bp)
Overview 1 RT 1: 79-5988 bp Neighborhood of RT #1 [79, 5988] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 79-1302 bp Feature: domain Description: COG3666 Location: 121-562 bp Feature: domain Description: COG3666 Location: 1 21 -562 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1039-1261 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 039-1 261 bp Feature: gene Location: 1553-1714 bp Feature: gene Location: 1800-3509 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1953-2550 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 953-2550 bp Feature: gene Location: 3953-5371 bp Feature: domain Description: ComA-like_MBL-fold Location: 4502-4988 bp Feature: domain Description: ComA-like_MBL-fold Location: 4502-4988 bp Feature: gene Location: 5725-5988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: MDXH01000109.1 Pseudomonas syringae pv. actinidiae strain M256 M256_109, whole genome shotgun sequence (37674 bp)
Overview 1 RT 1: 30486-36422 bp Neighborhood of RT #1 [30486, 36457] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30486-31574 bp Feature: domain Description: modC_ABC Location: 30501-31566 bp Feature: domain Description: modC_ABC Location: 30501-31566 bp Feature: gene Location: 31663-32718 bp Feature: domain Description: Top1 Location: 31696-32710 bp Feature: domain Description: Top1 Location: 31696-32 710 bp Feature: gene Location: 33549-35384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33810-34623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33810-3462 3 bp Feature: domain Description: Intron_maturas2 Location: 34719-35034 bp Feature: domain Description: Intron_maturas2 Location: 34719-35034 bp Feature: domain Description: HNHc Note: nucleases Location: 35157-35322 bp Feature: domain Description: HNHc Note: nucleases Location: 35157-3532 2 bp Feature: gene Location: 35624-35815 bp Feature: gene Location: 35822-36457 bp Feature: domain Description: DUF2625 Location: 35834-36422 bp Feature: domain Description: DUF2 62 5 Location: 35834-3642 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: MDXH01000217.1 Pseudomonas syringae pv. actinidiae strain M256 M256_217, whole genome shotgun sequence (4618 bp)
Overview 1 RT 1: 1773-3592 bp Neighborhood of RT #1 [1773, 4383] PRK14975 RVT-UG9 Feature: gene Location: 1773-2753 bp Feature: domain Description: PRK14975 Location: 1977-2694 bp Feature: domain Description: PRK14975 Location: 1977-2694 bp Feature: gene Location: 2866-3150 bp Feature: gene Location: 3313-4383 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3319-3592 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3 3 19-3 592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), RVT-UG9

Seq: MDXH01000231.1 Pseudomonas syringae pv. actinidiae strain M256 M256_231, whole genome shotgun sequence (1534 bp)
Overview 1 RT 1: 4-1531 bp Neighborhood of RT #1 [4, 1531] RVT-GII GIIM Feature: gene Location: 4-1272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 94 3-1165 bp Feature: gene Location: 1346-1531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MDXH01000236.1 Pseudomonas syringae pv. actinidiae strain M256 M256_236, whole genome shotgun sequence (689 bp)
Overview 1 RT 1: 3-600 bp Neighborhood of RT #1 [3, 605] RVT-GII Feature: gene Location: 3-605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246-600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246-600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MDXH01000237.1 Pseudomonas syringae pv. actinidiae strain M256 M256_237, whole genome shotgun sequence (575 bp)
Overview 1 RT 1: 3-507 bp Neighborhood of RT #1 [3, 572] RVT-GII GIIM Feature: gene Location: 3-572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 -252 bp Feature: domain Description: GIIM Note: maturase Location: 297-507 bp Feature: domain Description: GIIM Note: maturase Location: 297-507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)