myRT

myRT report for GCA_002890855.1_ASM289085v1

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Seq: POUV01000014.1 Pseudomonas kunmingensis strain CCUG 36651 NODE_14_length_109735_cov_20.3642, whole genome shotgun sequence (109735 bp)
Overview 1 RT 1: 7369-14252 bp Neighborhood of RT #1 [7369, 14287] COG0610 RVT-UG2 TnpB_IS66 Feature: gene Location: 7369-10551 bp Feature: domain Description: COG0610 Location: 7387-9925 bp Feature: domain Description: COG061 0 Location: 7387-9925 bp Feature: gene Location: 11169-11363 bp Feature: gene Location: 11476-12582 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 11491-12277 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 1 491 -1 2277 bp Feature: gene Location: 13629-13817 bp Feature: gene Location: 13928-14287 bp Feature: domain Description: TnpB_IS66 Location: 13958-14252 bp Feature: domain Description: TnpB_IS66 Location: 1 3958-1 4252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG2, TnpB_IS66 (pfam05717)

Seq: POUV01000018.1 Pseudomonas kunmingensis strain CCUG 36651 NODE_18_length_56411_cov_19.8584, whole genome shotgun sequence (56411 bp)
Overview 1 RT 1: 31000-39266 bp Neighborhood of RT #1 [31000, 39274] COG3178 RVT_N RVT-GII GIIM HNH LptD PRK10770 Feature: gene Location: 31000-32058 bp Feature: domain Description: COG3178 Location: 31048-32041 bp Feature: domain Description: COG3178 Location: 31048-32 041 bp Feature: gene Location: 33096-33251 bp Feature: gene Location: 33368-35074 bp Feature: domain Description: RVT_N Location: 33425-33665 bp Feature: domain Description: RVT_N Location: 3342 5-33665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33713-34346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33713-34346 bp Feature: domain Description: GIIM Note: maturase Location: 34400-34634 bp Feature: domain Description: GIIM Note: maturase Location: 34400-34634 bp Feature: domain Description: HNH Note: nucleases Location: 34886-35018 bp Feature: domain Description: HNH Note: nucleases Location: 34886-35018 bp Feature: gene Location: 35185-37986 bp Feature: domain Description: LptD Location: 35554-37969 bp Feature: domain Description: LptD Location: 35554-37969 bp Feature: gene Location: 38078-39274 bp Feature: domain Description: PRK10770 Location: 38084-39266 bp Feature: domain Description: PRK10770 Location: 38084-392 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: POUV01000035.1 Pseudomonas kunmingensis strain CCUG 36651 NODE_36_length_2193_cov_51.8214, whole genome shotgun sequence (2193 bp)
Overview 1 RT 1: 81-2191 bp Neighborhood of RT #1 [81, 2191] RVT_N RVT-GII GIIM Feature: gene Location: 81-1586 bp Feature: domain Description: RVT_N Location: 162-387 bp Feature: domain Description: RVT_N Location: 162-3 87 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438-1080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 8-1080 bp Feature: domain Description: GIIM Note: maturase Location: 1131-1365 bp Feature: domain Description: GIIM Note: maturase Location: 113 1-13 65 bp Feature: gene Location: 2003-2191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)